Scripts for miscelleneous bioinformatics tasks
☆49Jun 5, 2020Updated 6 years ago
Alternatives and similar repositories for bioinformatics-hacks
Users that are interested in bioinformatics-hacks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Sep 16, 2020Updated 6 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆44Oct 5, 2026Updated 3 weeks ago
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- Python Algorithms to solve Bioinformatics Problems☆18Jan 9, 2018Updated 8 years ago
- Git mirror of Bioconductor SRAdb package☆24Feb 20, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- Simple tool to verticalize text delimited files.☆36May 6, 2024Updated 2 years ago
- Variant call verification☆19May 12, 2025Updated last year
- A Pedantic FASTA Parser and Tool Set☆14Apr 22, 2020Updated 6 years ago
- A tiny package manager for crucial unix and bioinformatics tools☆27Apr 30, 2015Updated 11 years ago
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 7 years ago
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SARS-CoV-2 variant calling and consensus assembly pipeline☆25Sep 18, 2023Updated 3 years ago
- ☆21Feb 15, 2025Updated last year
- PHOsphoproteomic dissecTiOn using Networks☆16Jan 25, 2021Updated 5 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆57Feb 19, 2021Updated 5 years ago
- Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104☆19Jul 14, 2026Updated 3 months ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆181Nov 26, 2018Updated 7 years ago
- Metagenomics workflow from sequencing data to Metagenome-Assembled Genomes (MAGs)☆11May 27, 2022Updated 4 years ago
- Practical Introduction to Bioinformatics and Systems Biology with R (mainly)☆20Mar 9, 2010Updated 16 years ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 11 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- de novo virus assembler of Illumina paired reads☆59May 17, 2021Updated 5 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆15Jan 27, 2020Updated 6 years ago
- Burrows-Wheeler Aligner for x86,x86_64, arm and aarch64 architectures (PC, Raspberry PI, ODROID, M1)☆10Apr 13, 2022Updated 4 years ago
- A message queue for genomic surveillance☆19Oct 14, 2021Updated 5 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆69Aug 12, 2019Updated 7 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 9 years ago
- Scripts for finding restriction-modification systems in bacterial genomes.☆10Nov 9, 2023Updated 2 years ago
- HPO Annotation QC☆12Nov 24, 2025Updated 11 months ago
- Assembling the cause of phenotypes and genotypes from NGS data☆30Jun 11, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- eXtasy: Variant Prioritization by Genomic Data Fusion☆13Feb 19, 2014Updated 12 years ago
- ☆16Jun 26, 2013Updated 13 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 12 years ago
- Rapid mining of RNA structure motifs from profiling data.☆15Oct 20, 2021Updated 5 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆26Aug 9, 2025Updated last year