Alternatives and similar repositories for pyfasta

Users that are interested in pyfasta are comparing it to the libraries listed below

• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last week
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆84Updated 11 months ago
• brentp / cruzdb
  python access to UCSC genomes database
  ☆135Updated 4 years ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated 2 weeks ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• clintval / sample-sheet
  Parse Illumina sample sheets with Python
  ☆50Updated last year
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated 11 months ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• joshuagryphon / plastid
  Position-wise analysis of sequencing and genomics data
  ☆41Updated last year
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆95Updated last year
• acg-team / tral
  Tandem Repeat Annotation Library
  ☆25Updated 2 years ago
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆115Updated last year
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 7 years ago
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆108Updated 4 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 3 months ago
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆82Updated 7 years ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆133Updated 4 years ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆71Updated 9 years ago
• mgymrek / pybamview
  Browser based application for viewing bam alignments
  ☆56Updated 8 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆65Updated 2 months ago
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆62Updated 8 years ago
• alimanfoo / pysamstats
  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …
  ☆194Updated last month
• lpantano / seqcluster
  small RNA analysis from NGS data
  ☆37Updated 9 months ago
• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆144Updated last year
• mozack / abra2
  ABRA2
  ☆92Updated 2 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆71Updated 3 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆79Updated 4 months ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆121Updated last month