Alternatives and similar repositories for pyfasta:

Users that are interested in pyfasta are comparing it to the libraries listed below

• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 5 months ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 6 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆82Updated 7 months ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆63Updated 2 years ago
• brentp / cruzdb
  python access to UCSC genomes database
  ☆135Updated 4 years ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 5 years ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆81Updated this week
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆145Updated this week
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆109Updated 3 years ago
• marcus1487 / nanoraw
  Genome guided re-segmention and visualization for raw nanopore sequencing data.
  ☆46Updated 6 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆64Updated 5 months ago
• mgymrek / pybamview
  Browser based application for viewing bam alignments
  ☆56Updated 8 years ago
• acg-team / tral
  Tandem Repeat Annotation Library
  ☆24Updated last year
• sanger-pathogens / Fastaq
  Python3 scripts to manipulate FASTA and FASTQ files
  ☆70Updated 3 months ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 2 years ago
• mitenjain / nanopore
  UCSC Nanopore group's software pipeline for reference-based sequence analysis
  ☆53Updated 9 years ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• Kingsford-Group / scallop
  Scallop is a reference-based transcriptome assembler for RNA-seq
  ☆89Updated 3 years ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆121Updated last year
• clintval / sample-sheet
  Parse Illumina sample sheets with Python
  ☆50Updated 10 months ago
• nanoporetech / bwapy
  Python bindings to bwa mem
  ☆32Updated 4 years ago
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆92Updated last year
• LUMC / kPAL
  Analysis toolkit and programming library for k-mer profiles
  ☆30Updated 3 years ago
• refresh-bio / kmer-db
  Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…
  ☆85Updated 2 months ago
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆115Updated 10 months ago
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆113Updated 5 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆69Updated 8 years ago
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆46Updated 6 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 6 years ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆79Updated 10 months ago