eWaterCycle / setup-singularityLinks
GitHub action to setup singularity
☆18Updated 2 years ago
Alternatives and similar repositories for setup-singularity
Users that are interested in setup-singularity are comparing it to the libraries listed below
Sorting:
- GitHub action to setup apptainer☆16Updated last year
- A package for downloading and uploading figshare data☆26Updated 2 years ago
- Configure workflow/pipeline tests using yaml files.☆71Updated last year
- Python utilities for CWL☆42Updated 2 weeks ago
- A repository to practice contributing to a Manubot manuscript☆48Updated 7 months ago
- Misc. utilities☆11Updated 6 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- ☆17Updated 2 years ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆45Updated last month
- A small python library to adjust and annotate axis ticklabels in plots.☆52Updated 5 months ago
- A Github action for running a Snakemake workflow☆62Updated last month
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 9 years ago
- YAML template engine☆42Updated last month
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Updated 2 years ago
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆45Updated 2 years ago
- Simple installer for conda (and conda-likes)☆17Updated last month
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆21Updated 9 years ago
- SQL support plugin for Nextflow☆32Updated 4 months ago
- Convert bioinformatics file formats to Zarr☆43Updated last week
- Create cwl workflows by writing a simple Python script☆40Updated 5 years ago
- Python wrapper around the C DRMAA library.☆108Updated 6 years ago
- Should you cite this software?☆33Updated 5 years ago
- Pretty GridEngine, Torque and Platform LSF status tables☆33Updated 9 years ago
- ☆33Updated 5 months ago
- cy3sbml: SBML for Cytoscape 3☆15Updated 2 months ago
- ☆10Updated 4 months ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Create minimal docker images from conda environments☆61Updated 2 years ago
- Monitor computational workflows in real time☆73Updated last year