Alternatives and similar repositories for setup-singularity

Users that are interested in setup-singularity are comparing it to the libraries listed below

• common-workflow-language / cwl-utils
  Python utilities for CWL
  ☆40Updated this week
• jupyter-widgets-contrib / ipyigv
  A Jupyter wrapper for the igv.js library (representation of genomic data)
  ☆26Updated 4 years ago
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 6 years ago
• manubot / try-manubot
  A repository to practice contributing to a Manubot manuscript
  ☆47Updated 5 months ago
• singularityhub / singularity-deploy
  Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client
  ☆17Updated 2 years ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆70Updated last year
• eWaterCycle / setup-apptainer
  GitHub action to setup apptainer
  ☆15Updated 10 months ago
• conda-incubator / ensureconda
  Simple installer for conda (and conda-likes)
  ☆17Updated 2 weeks ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆42Updated last week
• mlf-core / mlf-core
  CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
  ☆45Updated 2 years ago
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆14Updated 2 weeks ago
• umccr / cwl-ica
  A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide
  ☆13Updated last week
• vsoch / forward
  Port Forwarding Utility
  ☆53Updated last year
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆60Updated last week
• cognoma / figshare
  A package for downloading and uploading figshare data
  ☆24Updated 2 years ago
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 5 years ago
• mr-c / shouldacite
  Should you cite this software?
  ☆32Updated 5 years ago
• COMBINE-lab / pyroe
  ☆16Updated 10 months ago
• msbentsen / plotannot
  A small python library to adjust and annotate axis ticklabels in plots.
  ☆52Updated 3 months ago
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 8 years ago
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆39Updated 5 months ago
• fair-research / bdbag
  Big Data Bag Utilities
  ☆51Updated last month
• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆27Updated last year
• bihealth / bih-cluster
  BIH Cluster Wiki
  ☆18Updated 3 weeks ago
• laminlabs / nbproject
  Light-weight Jupyter notebook tracker.
  ☆34Updated 6 months ago
• Snakemake-Profiles / pbs-torque
  ☆17Updated 2 years ago
• common-workflow-lab / ipython2cwl
  IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
  ☆17Updated last week
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆20Updated 3 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆20Updated 4 years ago