eWaterCycle / setup-singularityLinks
GitHub action to setup singularity
☆18Updated 2 years ago
Alternatives and similar repositories for setup-singularity
Users that are interested in setup-singularity are comparing it to the libraries listed below
Sorting:
- GitHub action to setup apptainer☆16Updated last year
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- Python utilities for CWL☆42Updated 2 weeks ago
- Misc. utilities☆11Updated 6 years ago
- Configure workflow/pipeline tests using yaml files.☆70Updated last year
- A package for downloading and uploading figshare data☆27Updated 2 years ago
- cy3sbml: SBML for Cytoscape 3☆15Updated 2 weeks ago
- A repository to practice contributing to a Manubot manuscript☆48Updated 8 months ago
- A Github action for running a Snakemake workflow☆62Updated last month
- Simple installer for conda (and conda-likes)☆17Updated this week
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆47Updated this week
- ☆17Updated 2 years ago
- Nextflow plugin implementation skeleton☆11Updated 5 months ago
- A small python library to adjust and annotate axis ticklabels in plots.☆52Updated 6 months ago
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆20Updated 9 years ago
- Create cwl workflows by writing a simple Python script☆40Updated 5 years ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Updated 2 years ago
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 9 years ago
- Nextflow pipeline for hyperparameter optimization of machine learning models☆25Updated last year
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated last year
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆15Updated 4 years ago
- Bam to Pandas DataFrame, quickly☆13Updated 8 months ago
- Light-weight Jupyter notebook tracker.☆35Updated 9 months ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆30Updated 5 years ago
- SQL support plugin for Nextflow☆32Updated 4 months ago
- a python library for working with flow cytometry data.☆14Updated 10 years ago
- Big Data Bag Utilities☆52Updated last week
- Should you cite this software?☆33Updated 5 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 8 years ago
- Monitor computational workflows in real time☆74Updated last year