Alternatives and similar repositories for setup-singularity:

Users that are interested in setup-singularity are comparing it to the libraries listed below

• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆27Updated this week
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆56Updated 3 weeks ago
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 5 years ago
• msbentsen / plotannot
  A small python library to adjust and annotate axis ticklabels in plots.
  ☆52Updated 2 years ago
• MaayanLab / FAIRshake
  ☆10Updated 4 months ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• schlegelp / bioRxiv-LaTeX-template
  LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org
  ☆21Updated 8 years ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆18Updated 3 years ago
• pwwang / plotnine-prism
  Prism themes for plotnine, inspired by ggprism.
  ☆14Updated last year
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆67Updated 6 months ago
• conda-incubator / ensureconda
  Simple installer for conda (and conda-likes)
  ☆15Updated last year
• manubot / try-manubot
  A repository to practice contributing to a Manubot manuscript
  ☆46Updated 3 months ago
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 7 years ago
• common-workflow-language / cwl-utils
  Python utilities for CWL
  ☆39Updated this week
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆13Updated 2 years ago
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆52Updated 2 years ago
• cognoma / figshare
  A package for downloading and uploading figshare data
  ☆23Updated last year
• singularityhub / singularity-deploy
  Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client
  ☆16Updated last year
• eWaterCycle / setup-apptainer
  GitHub action to setup apptainer
  ☆11Updated last month
• nextflow-io / hyperopt
  Nextflow pipeline for hyperparameter optimization of machine learning models
  ☆21Updated 9 months ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆37Updated 2 months ago
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆91Updated last year
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 5 months ago
• greenelab / meta-review
  Manuscript describing open collaborative writing with Manubot
  ☆49Updated 4 years ago
• pirl-unc / mhcgnomes
  Parsing MHC nomenclature in the wild
  ☆16Updated 4 months ago
• frankier / singslurm2
  Snakemake + Singularity + SLURM
  ☆9Updated 3 years ago
• kylessmith / ailist
  Augmented Interval Tree implemented in Cython/C
  ☆19Updated last month
• jupyter-widgets-contrib / ipyigv
  A Jupyter wrapper for the igv.js library (representation of genomic data)
  ☆26Updated 4 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago