Alternatives and similar repositories for setup-singularity

Users that are interested in setup-singularity are comparing it to the libraries listed below

• common-workflow-language / cwl-utils
  Python utilities for CWL
  ☆40Updated 2 weeks ago
• eWaterCycle / setup-apptainer
  GitHub action to setup apptainer
  ☆15Updated 7 months ago
• singularityhub / singularity-deploy
  Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client
  ☆17Updated last year
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆39Updated last week
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 6 years ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆59Updated 2 months ago
• cognoma / figshare
  A package for downloading and uploading figshare data
  ☆23Updated 2 years ago
• jupyter-widgets-contrib / ipyigv
  A Jupyter wrapper for the igv.js library (representation of genomic data)
  ☆26Updated 4 years ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆68Updated last year
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆14Updated last week
• cthoyt / zenodo-client
  A tool for automated uploading and version management of scientific data to Zenodo
  ☆37Updated 3 months ago
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 5 years ago
• manubot / try-manubot
  A repository to practice contributing to a Manubot manuscript
  ☆47Updated 3 months ago
• msbentsen / plotannot
  A small python library to adjust and annotate axis ticklabels in plots.
  ☆52Updated 3 weeks ago
• mlf-core / mlf-core
  CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
  ☆45Updated 2 years ago
• schlegelp / bioRxiv-LaTeX-template
  LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org
  ☆21Updated 9 years ago
• sseemayer / qstat-pretty
  Pretty GridEngine, Torque and Platform LSF status tables
  ☆33Updated 8 years ago
• MaayanLab / FAIRshake
  ☆10Updated this week
• Snakemake-Profiles / pbs-torque
  ☆17Updated last year
• nextflow-io / nf-hello
  Nextflow plugin implementation skeleton
  ☆11Updated 3 months ago
• portugueslab / flammkuchen
  Flexible HDF5 saving/loading library forked from deepdish (University of Chicago) and maintained by the Portugues lab
  ☆16Updated 8 months ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆19Updated 3 years ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated last week
• vsoch / forward
  Port Forwarding Utility
  ☆52Updated last year
• CoBrALab / qbatch
  ☆33Updated 2 weeks ago
• kalekundert / exmemo
  Lab notebook for people who like the command line.
  ☆11Updated last year
• trytoolchest / lug
  Run Python functions locally or in the cloud. Built for computational science.
  ☆23Updated last year
• nextflow-io / hyperopt
  Nextflow pipeline for hyperparameter optimization of machine learning models
  ☆24Updated last year
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆85Updated 3 weeks ago
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆38Updated 3 months ago