molML / peptidyLinks
The official codebase of peptidy, a peptide processing tool for machine learning.
☆33Updated 4 months ago
Alternatives and similar repositories for peptidy
Users that are interested in peptidy are comparing it to the libraries listed below
Sorting:
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆18Updated last month
- Python package to atom map, correct and suggest enzymatic reactions☆39Updated last year
- Python package to manage protein structures and their annotations☆44Updated last year
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆46Updated 2 months ago
- A Unified Approach to Protein Engineering☆42Updated last year
- Code for deep learning guided design of dynamic proteins☆29Updated last year
- ☆26Updated 3 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆30Updated last year
- Explicit crosslinks in AlphaFold 3☆22Updated 6 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆41Updated 3 months ago
- Efficient manipulation of protein structures in Python☆57Updated this week
- Plugin for folding sequences directly in PyMOL☆27Updated last month
- Kuhlman Lab Installation of AlphaFold3☆30Updated this week
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 3 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 2 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- Machine learning prediction of enzyme optimum pH☆45Updated 4 months ago
- ☆21Updated last year
- PyPEF – Pythonic Protein Engineering Framework☆24Updated this week
- Analysis of alphafold and colabfold results☆31Updated 2 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆36Updated 3 months ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆27Updated this week
- ☆50Updated 9 months ago
- PyDock Tutorial☆33Updated 7 years ago
- Code for ApoDock☆20Updated 5 months ago
- ☆21Updated 4 months ago
- Metrics for our protein design competitions.☆35Updated 10 months ago
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆25Updated 2 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆65Updated 9 months ago
- Learning Binding Affinities via Fine-tuning of Protein and Ligand Language Models☆29Updated 9 months ago