saalfeldlab / CNNectomeLinks
Scripts for building, training and validating CNNs for Connectomics
☆13Updated 2 years ago
Alternatives and similar repositories for CNNectome
Users that are interested in CNNectome are comparing it to the libraries listed below
Sorting:
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- ☆32Updated 6 months ago
- Cloud-based data annotation tools for biological images☆84Updated last year
- Open source Python library for building bioimage analysis pipelines☆188Updated this week
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆25Updated 6 months ago
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Updated 10 months ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆124Updated this week
- Piecewise alignment for layers of mosaics☆35Updated 5 months ago
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆25Updated last year
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆46Updated 2 months ago
- ☆24Updated 5 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆60Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 2 months ago
- CODEX data processing code☆12Updated 7 months ago
- CellProfiler tutorial pipelines and images☆99Updated this week
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆55Updated last month
- Community-contributed and experimental CellProfiler modules.☆72Updated 3 weeks ago
- PAthological QUpath Obsession - QuPath and Python conversations☆133Updated 5 months ago
- QuPath extension for Cellsparse☆19Updated 9 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 7 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated 3 weeks ago
- Deep Learning for EM Connectomics☆16Updated 3 years ago
- ☆24Updated 2 years ago
- GPU-accelerated image processing for everyone☆55Updated last year