Workflow for viral analysis guided by reference
☆18Feb 19, 2026Updated last month
Alternatives and similar repositories for ViralFlow
Users that are interested in ViralFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM☆29Feb 6, 2024Updated 2 years ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆52Mar 19, 2026Updated last week
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- RSV-A lineage definitions and proposals☆14Nov 9, 2025Updated 4 months ago
- Repo for PrimerSchemes☆17Feb 24, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆13Oct 9, 2025Updated 5 months ago
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆22Aug 15, 2025Updated 7 months ago
- A Nextflow workflow for HLA typing using HLA-HD☆14Jul 3, 2024Updated last year
- Deep learning based prediction of pi-helices in protein sequences☆11Mar 24, 2023Updated 3 years ago
- Freelance bioinformaticians directory☆10Feb 10, 2023Updated 3 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆12Sep 9, 2025Updated 6 months ago
- The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…☆24Updated this week
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Sep 22, 2017Updated 8 years ago
- Primalscheme3. Generation of highly multiplex primerschemes☆22Dec 4, 2025Updated 3 months ago
- ☆10Mar 25, 2025Updated last year
- NGSeminar on the use of Jupyter and R notebooks in biomedical research☆13Jan 28, 2023Updated 3 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Aug 9, 2024Updated last year
- A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.☆11Jan 2, 2019Updated 7 years ago
- Multi-Task Topological Laplacian deep learning model that predicts binding free energy changes upon mutation☆13Dec 13, 2024Updated last year
- Virus Identification☆25May 26, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 2 years ago
- Viral (meta)-genome assembly pipeline.☆23Mar 6, 2026Updated 2 weeks ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Mar 17, 2026Updated last week
- A script to run HLA typing tools from next generation sequencing data☆12Jan 4, 2023Updated 3 years ago
- ☆15Mar 7, 2025Updated last year
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 4 months ago
- A tool for exploring large trees in the browser☆125Mar 17, 2026Updated last week
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Apr 27, 2023Updated 2 years ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆60Mar 23, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆87Mar 14, 2026Updated last week
- ☆17May 10, 2022Updated 3 years ago
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated 10 months ago
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆17Mar 18, 2023Updated 3 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆63Mar 18, 2026Updated last week
- ☆12Apr 16, 2018Updated 7 years ago