highthroughput rRNA sequence classification and OTU mapping for metagenomic samples
☆25Nov 3, 2023Updated 2 years ago
Alternatives and similar repositories for MAPseq
Users that are interested in MAPseq are comparing it to the libraries listed below
Sorting:
- Analysis tool for Nanopore sequencing data☆11Apr 26, 2024Updated last year
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- A Python package for gene-centric taxonomic and functional classification using phylogenetic placement☆26Sep 3, 2024Updated last year
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Collection of commonly used RDP Tools for easy building☆51Jun 8, 2023Updated 2 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 8 months ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Updated this week
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 4 years ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- Accurate quality filtering of metagenomic amplicon sequences☆12Aug 26, 2019Updated 6 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 4 years ago
- ☆29Jun 12, 2024Updated last year
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 4 years ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated last month
- A command line program for large scale buffering between piped programs☆16Nov 19, 2021Updated 4 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Dec 21, 2022Updated 3 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Feb 2, 2026Updated 3 weeks ago
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 7 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Mar 31, 2022Updated 3 years ago
- AC-DIAMOND is a DNA-protein alignment tool☆16Oct 11, 2023Updated 2 years ago
- Example of SGTK application for E.coli dataset:☆31Jul 13, 2020Updated 5 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated 11 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics☆26Mar 21, 2013Updated 12 years ago
- ☆35Dec 24, 2020Updated 5 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 3 years ago
- Scripts and libraries for Environmental Genomics☆38Feb 11, 2025Updated last year
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 3 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 3 months ago
- ☆15Apr 19, 2018Updated 7 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆299Apr 25, 2025Updated 10 months ago
- annotation pipeline for microbial genomes and metagenomes☆18Feb 23, 2018Updated 8 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- simple and not slow ORF caller☆21Nov 6, 2025Updated 3 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago