jfmrod / MAPseqLinks
highthroughput rRNA sequence classification and OTU mapping for metagenomic samples
☆25Updated 2 years ago
Alternatives and similar repositories for MAPseq
Users that are interested in MAPseq are comparing it to the libraries listed below
Sorting:
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32Updated 9 months ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- CRyPTIC data processing pipelines☆34Updated last year
- De novo Extraction of Strains from MetAgeNomes☆72Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Visualize whole genome alignments as linear maps☆74Updated 2 weeks ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 6 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- Split Kmer Analysis☆67Updated 3 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 10 months ago
- Gene-flank analysis tool☆37Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- Microbiome classification pipeline☆65Updated 8 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Updated 8 years ago
- ☆84Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Updated 7 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago