jfmrod / MAPseq
highthroughput rRNA sequence classification and OTU mapping for metagenomic samples
☆24Updated last year
Alternatives and similar repositories for MAPseq:
Users that are interested in MAPseq are comparing it to the libraries listed below
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Estimate metagenomic coverage and sequence diversity☆51Updated 8 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- ☆23Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆13Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆15Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- ☆52Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆23Updated last week
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆47Updated 3 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated 10 months ago
- Gene-flank analysis tool☆27Updated 4 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago