epigen / unsupervised_analysisLinks
A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.
☆30Updated 2 weeks ago
Alternatives and similar repositories for unsupervised_analysis
Users that are interested in unsupervised_analysis are comparing it to the libraries listed below
Sorting:
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆58Updated last week
- A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …☆25Updated 3 weeks ago
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆22Updated 3 weeks ago
- CeMM's Snakemake SLURM cluster profile☆16Updated 8 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆64Updated 2 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- MrBiomics: Modules & Recipes augment Bioinformatics for Multi-Omics Analyses☆53Updated last week
- machine-readable file format for genomic library sequence and structure☆120Updated last week
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆80Updated 3 weeks ago
- A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…☆40Updated 2 weeks ago
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆23Updated 3 weeks ago
- ☆31Updated 5 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆94Updated 11 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆170Updated last week
- Parsing tools for GTF (gene transfer format) files☆121Updated 4 months ago
- Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing☆13Updated 2 weeks ago
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 7 months ago
- Analysis pipeline for the GUIDE-seq assay.☆26Updated 2 months ago
- ☆11Updated 5 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 8 months ago
- Tools for working with BUS files☆101Updated last month
- Quantification of transposable element expression using RNA-seq☆71Updated last year
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆69Updated this week
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆75Updated last year
- Lightweight converter between hic and cool contact matrices.☆73Updated last year
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 7 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 6 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 4 years ago
- A network-based approach for exon set enrichment☆15Updated 3 months ago