A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.
☆67Aug 3, 2026Updated last month
Alternatives and similar repositories for unsupervised_analysis
Users that are interested in unsupervised_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma…☆64Mar 24, 2026Updated 6 months ago
- CeMM's Snakemake SLURM cluster profile☆50Oct 8, 2025Updated 11 months ago
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆56Dec 7, 2025Updated 9 months ago
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆60Jan 29, 2026Updated 7 months ago
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆47Jun 23, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆46Aug 5, 2025Updated last year
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆220May 12, 2026Updated 4 months ago
- Accessible and interoperable whole slide image analysis☆325Aug 30, 2026Updated 3 weeks ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- Large language models as universal biomedical simulators☆20Jul 17, 2024Updated 2 years ago
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)☆323Updated this week
- Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.☆22Feb 9, 2026Updated 7 months ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- Project metadata manager for biological sample metadata in Python☆40Aug 31, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- ☆11Aug 12, 2026Updated last month
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- Differentiable simulation of proliferating and active cell clusters.☆15Jul 28, 2026Updated last month
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- R package: Manifold learning in R☆14Apr 7, 2020Updated 6 years ago
- ☆12Oct 30, 2023Updated 2 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago
- An R package providing datasets useful for testing clustering algorithms☆17Apr 11, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The full training script for Enformer - Tensorflow Sonnet☆18Apr 18, 2022Updated 4 years ago
- VIGOR4☆24Aug 15, 2025Updated last year
- Single sample pathway analysis tools for omics data☆15Nov 9, 2024Updated last year
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 6 years ago
- ☆15Oct 9, 2021Updated 4 years ago
- ☆20Sep 17, 2026Updated last week
- A short tutorial to using DL and keras for genomics with sequence data.☆16Dec 3, 2020Updated 5 years ago
- ☆16May 21, 2026Updated 4 months ago
- Nanopore 3' end-capture sequencing (Begik et al., Nat Methods 2022)☆15Aug 18, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TF Binding and Expression Target Analysis 2☆22Nov 19, 2025Updated 10 months ago
- An awesome tool to visualize snakemake rule graphs☆42May 2, 2026Updated 4 months ago
- Causal Modeling with Stationary Diffusions, AISTATS 2024☆22Mar 3, 2025Updated last year
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆22Sep 18, 2026Updated last week
- Dynamic Markov Blanket Discovery☆15Mar 27, 2024Updated 2 years ago
- A python program that applies a choice of nonnegative matrix factorization (NMF) algorithms to a dataset for clustering.☆13Jun 10, 2019Updated 7 years ago
- ☆25Dec 5, 2025Updated 9 months ago