A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.
☆67May 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for unsupervised_analysis
Users that are interested in unsupervised_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CeMM's Snakemake SLURM cluster profile☆50Oct 8, 2025Updated 8 months ago
- A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…☆77Updated this week
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆56Dec 7, 2025Updated 6 months ago
- A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…☆56Sep 5, 2025Updated 9 months ago
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆101Nov 25, 2025Updated 6 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses☆169Apr 1, 2026Updated 2 months ago
- RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆46Aug 5, 2025Updated 10 months ago
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆46Jun 23, 2025Updated 11 months ago
- Accessible and interoperable whole slide image analysis☆298Jun 3, 2026Updated last week
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆208May 12, 2026Updated last month
- Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.☆22Feb 9, 2026Updated 4 months ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- ☆10Jun 3, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Project metadata manager for PEPs in Python☆40Apr 1, 2026Updated 2 months ago
- Python toolkit for building restartable pipelines☆48Mar 6, 2026Updated 3 months ago
- Simulation and optimization of cell clusters.☆12Aug 25, 2025Updated 9 months ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆21Aug 29, 2022Updated 3 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- R package: Manifold learning in R☆14Apr 7, 2020Updated 6 years ago
- ☆11Oct 30, 2023Updated 2 years ago
- Code to calculate Moran's I in R quickly and memory efficiently☆16Jan 16, 2025Updated last year
- An R package providing datasets useful for testing clustering algorithms☆17Apr 11, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Nov 19, 2021Updated 4 years ago
- The full training script for Enformer - Tensorflow Sonnet☆18Apr 18, 2022Updated 4 years ago
- ☆15Oct 9, 2021Updated 4 years ago
- VIGOR4☆22Aug 15, 2025Updated 9 months ago
- Compound ranking predictions from gene expression signatures using ensemble neural network models.☆78Mar 23, 2026Updated 2 months ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 6 years ago
- ☆16May 21, 2026Updated 3 weeks ago
- ☆20May 31, 2024Updated 2 years ago
- ☆22Apr 7, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A short tutorial to using DL and keras for genomics with sequence data.☆15Dec 3, 2020Updated 5 years ago
- The Genome Analysis Tutorial Page.☆13Oct 5, 2019Updated 6 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Sep 5, 2023Updated 2 years ago
- ☆29Jan 30, 2026Updated 4 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 11 months ago
- ☆34Feb 5, 2025Updated last year
- Benchmark of GRNs using the GRETA pipeline☆33Updated this week