MaryamHaghighat / PathProfilerLinks
Pipeline for computational pathology
☆37Updated 2 years ago
Alternatives and similar repositories for PathProfiler
Users that are interested in PathProfiler are comparing it to the libraries listed below
Sorting:
- Python 3 library for the augmentation & normalization of H&E images☆62Updated 3 years ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆37Updated 11 months ago
- ☆20Updated 3 years ago
- GrandQC tool for tissue detection and quality control in pathology☆76Updated 2 weeks ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated 2 months ago
- A Python library for deep learning on whole-slide images☆52Updated 4 years ago
- Re-stained whole slide image alignment☆36Updated 2 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆84Updated last year
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆29Updated last year
- ☆57Updated 3 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆79Updated 11 months ago
- machine-readable information for the TCGA dataset, mirrored from other sources☆21Updated 3 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆84Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- ☆46Updated 4 years ago
- Code from Foersch et al. (Under Construction / Development)☆38Updated 2 years ago
- End-to-end pipeline to go from raw H&E slides to normalised extracted features for training☆27Updated last year
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated 2 months ago
- Solid Tumor Associative Modeling in Pathology☆105Updated last week
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆112Updated 11 months ago
- ☆36Updated 9 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆71Updated 3 years ago
- An open-source digital pathology based rapid image annotation tool☆90Updated this week
- Stain normalization tools for histological analysis and computational pathology☆170Updated 2 months ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Updated 3 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- Coincides with blogpost for using geojson and shapely☆33Updated 5 years ago
- Histopathology Slides Preprocessing Pipeline☆42Updated last week