open-pathology / awesome-pathologyLinks
Awesome List of Digital and Computational Pathology Resources
☆70Updated 7 months ago
Alternatives and similar repositories for awesome-pathology
Users that are interested in awesome-pathology are comparing it to the libraries listed below
Sorting:
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆81Updated 3 weeks ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆81Updated last year
- Multimodal prototyping for cancer survival prediction - ICML 2024☆91Updated 6 months ago
- Standardized benchmark for computational pathology foundation models.☆96Updated 2 weeks ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆31Updated last year
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆138Updated 6 months ago
- GrandQC tool for tissue detection and quality control in pathology☆61Updated 5 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 7 months ago
- Tools to build deep learning pipelines.☆105Updated 9 months ago
- List of pathology feature extractors and foundation models☆147Updated 2 months ago
- Solid Tumor Associative Modeling in Pathology☆84Updated this week
- Virtual Alignment of pathoLogy Image Series☆172Updated 2 months ago
- This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…☆39Updated 3 months ago
- ☆54Updated 2 years ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆24Updated this week
- [MICCAI 2023 Oral] The official code of "Pathology-and-genomics Multimodal Transformer for Survival Outcome Prediction" (top 9%)☆97Updated 5 months ago
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆55Updated 8 months ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆105Updated 10 months ago
- ☆23Updated 9 months ago
- Pipeline for computational pathology☆38Updated last year
- This repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.☆74Updated 5 months ago
- DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs☆61Updated 8 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆93Updated last week
- ☆27Updated 6 months ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆154Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆105Updated 9 months ago
- First commit☆62Updated 3 years ago
- ☆63Updated 11 months ago
- Repository for the Giga-SSL paper☆25Updated 10 months ago
- A vision language model for gigapixel whole slide images in histopathology☆70Updated last month