SurGen: 1020 H&E-stained Whole Slide Images With Survival and Genetic Markers
☆18Nov 2, 2025Updated 4 months ago
Alternatives and similar repositories for SurGen-Dataset
Users that are interested in SurGen-Dataset are comparing it to the libraries listed below
Sorting:
- COntrastive Biomarker Representation Alignment (COBRA) [CVPR25]☆22Oct 1, 2025Updated 5 months ago
- ☆46Jan 10, 2022Updated 4 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Jan 5, 2023Updated 3 years ago
- Variance pooling to incorporate ITH in CPath models - MICCAI 2022☆26Sep 27, 2022Updated 3 years ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆27Feb 23, 2024Updated 2 years ago
- Hibou: Foundational Models for Pathology☆76Oct 23, 2024Updated last year
- ☆12May 24, 2023Updated 2 years ago
- Dockerfile to build a working CellProfiler (http://cellprofiler.org/) image☆11Jun 2, 2022Updated 3 years ago
- Repository of the paper: "Histo-Miner: Tissue Features Extraction With Deep Learning from H&E Images of Squamous Cell Carcinoma Skin Canc…☆19Feb 5, 2026Updated 3 weeks ago
- ☆22Aug 17, 2025Updated 6 months ago
- Mock of streamlit to allow unit tests☆10Aug 4, 2022Updated 3 years ago
- Automated Quantitative Trait Locus Analysis (AutoQTL)☆10Mar 5, 2024Updated last year
- Synthetic histology using GANs, for deep learning model explainability and trainee education.☆16Jan 5, 2024Updated 2 years ago
- A simple wrapper for python-bioformats to convert .vsi CellSense format to TIFF.☆12Apr 9, 2022Updated 3 years ago
- Code and dataset for the paper "Deep Learning Based Glaucoma Detection with Cropped Optic Cup and Disc and Blood Vessel Segmentation"☆10Feb 2, 2025Updated last year
- ☆12Aug 22, 2022Updated 3 years ago
- Accessible and interoperable whole slide image analysis☆185Updated this week
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- ☆11Apr 26, 2021Updated 4 years ago
- ☆12Mar 9, 2025Updated 11 months ago
- ☆12May 16, 2019Updated 6 years ago
- This repository contains the code of Van De Vyver, Gilles, et al. "Towards Robust Cardiac Segmentation using Graph Convolutional Networks…☆19Feb 27, 2025Updated last year
- Code for the paper "Model Agnostic Interpretability for Multiple Instance Learning".☆13Jan 28, 2022Updated 4 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 3 years ago
- ☆13Aug 16, 2024Updated last year
- time picture explorer.☆12Feb 11, 2015Updated 11 years ago
- An implementation of Compositional Attention: Disentangling Search and Retrieval by MILA☆14Jun 1, 2022Updated 3 years ago
- Learn to code for NLP☆10Jul 20, 2020Updated 5 years ago
- ☆14Feb 11, 2020Updated 6 years ago
- ☆15Jul 26, 2022Updated 3 years ago
- Segment Anything Model (SAM) interactive demo with OpenVINO☆13Jun 5, 2024Updated last year
- This is a joint project between Helmholtz Imaging (located at DKFZ) and Lin Yang and Otmar Schmid (Helmholtz Munich).☆11Nov 6, 2024Updated last year
- CBMIL: Clustering-based Multi-instance Learning Network for Whole Slide Image Classification☆11Mar 5, 2023Updated 2 years ago
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated last year
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- ☆14Nov 5, 2025Updated 3 months ago
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆12Sep 30, 2024Updated last year
- Run Deekseek LLM model locally with Ollama, deepseek-r1:1.5b, and React☆11Jan 29, 2025Updated last year
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 6 months ago