Alternatives and similar repositories for PathBench-MIL

Users that are interested in PathBench-MIL are comparing it to the libraries listed below

• mahmoodlab / TRIDENT
  Toolkit for large-scale whole-slide image processing.
  ☆293Updated this week
• mahmoodlab / PANTHER
  Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
  ☆137Updated 4 months ago
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆80Updated last year
• DIAGNijmegen / pathology-hooknet-tls
  ☆21Updated 7 months ago
• impromptuRong / hd_wsi
  ☆34Updated 3 months ago
• BiomedSciAI / histocartography
  A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…
  ☆257Updated last year
• georg-wolflein / pathology-foundation-models
  List of pathology feature extractors and foundation models
  ☆141Updated last month
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆166Updated 3 weeks ago
• mahmoodlab / Patho-Bench
  Standardized benchmark for computational pathology foundation models.
  ☆89Updated last month
• agentdr1 / LA_MIL
  Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch
  ☆24Updated last year
• mahmoodlab / Patch-GCN
  Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
  ☆153Updated last year
• PathologyDataScience / MuTILs_Panoptic
  Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…
  ☆21Updated last month
• taliq / TEA-graph
  First commit
  ☆62Updated 3 years ago
• Xiyue-Wang / RetCCL
  ☆102Updated last year
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆30Updated last year
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆104Updated 7 months ago
• qinghezeng / Histo2GeneSignatures
  Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images
  ☆20Updated last year
• MWod / DeeperHistReg
  DeeperHistReg - Source Code
  ☆66Updated last year
• andreped / vsi2tif
  Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF
  ☆20Updated 5 months ago
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆104Updated 8 months ago
• Xiyue-Wang / TransPath
  ☆320Updated 3 months ago
• owkin / HistoSSLscaling
  Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…
  ☆155Updated last year
• TissueImageAnalytics / iguana
  Interpretable Gland-Graph Networks
  ☆22Updated last year
• open-pathology / awesome-pathology
  Awesome List of Digital and Computational Pathology Resources
  ☆66Updated 6 months ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆102Updated 5 months ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆68Updated 2 years ago
• mahmoodlab / PORPOISE
  Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
  ☆215Updated 2 years ago
• cwlkr / torchvahadane
  Gpu accelerated vahadane stain normalization for Digital Pathology workflows.
  ☆25Updated last year
• wenqi006 / SlideGraph
  ☆55Updated 3 years ago
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆36Updated 5 months ago