Salmonella serotyping from genome sequencing data
☆11Sep 3, 2018Updated 7 years ago
Alternatives and similar repositories for SeqSero
Users that are interested in SeqSero are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆28Sep 7, 2019Updated 6 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated last year
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆37Apr 24, 2025Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- Primalscheme3. Generation of highly multiplex primerschemes☆26Dec 4, 2025Updated 7 months ago
- Utilities written for bioinformatics☆17Sep 27, 2022Updated 3 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆26Jul 13, 2018Updated 8 years ago
- VIGOR4☆22Aug 15, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 6 months ago
- Percentile-normalization method for correcting batch effects in case-control studies☆12Oct 26, 2019Updated 6 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 8 months ago
- Primer schemes for real-time genome epidemiology☆30Jun 14, 2023Updated 3 years ago
- Renames headers in FASTA file☆13Jun 28, 2017Updated 9 years ago
- SeqSero2☆41Oct 1, 2025Updated 9 months ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Um scraper e processador de dados automatizado para extrair, limpar e organizar relatórios financeiros do portal IF.data do Banco Central…☆15Apr 3, 2026Updated 3 months ago
- C++ wrapper to tabix indexer☆17Jun 27, 2025Updated last year
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- Standard database for the TBProfiler tool☆30Jun 23, 2026Updated last month
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 8 years ago
- ☆16Oct 2, 2019Updated 6 years ago
- Swift 5 based turn based RPG game using GameplayKit and SpriteKit. WIP☆11Mar 28, 2019Updated 7 years ago
- ☆14Feb 6, 2020Updated 6 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- sequence element (kmer) enrichment analysis☆45Nov 7, 2022Updated 3 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated 3 months ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆67Jun 11, 2026Updated last month
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Jan 17, 2022Updated 4 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 4 months ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago