shu65 / open-problems-multimodal
1st place solution of Kaggle Open Problems - Multimodal Single-Cell Integration
☆42Updated last year
Related projects ⓘ
Alternatives and complementary repositories for open-problems-multimodal
- ☆74Updated 2 years ago
- Primary RNA sequence model☆29Updated 5 months ago
- Cell2Sentence turns scRNA-seq data into text for LLM training.☆84Updated 2 months ago
- Biological Network Integration using Convolutions☆59Updated 9 months ago
- Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)☆74Updated 3 years ago
- A deep-learning framework for multi-omics integration☆24Updated last year
- Create cell sentences from sequencing data☆21Updated 3 months ago
- ☆51Updated 2 months ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆26Updated 2 weeks ago
- ☆18Updated 2 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆88Updated 2 months ago
- A repository for neural representational learning of RNA secondary structures☆31Updated 4 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated last year
- Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network☆71Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆67Updated 7 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆48Updated 2 years ago
- ☆19Updated last year
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆104Updated 3 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆96Updated last week
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Updated 3 years ago
- Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.☆22Updated 2 years ago
- Images and other data from the JUMP Cell Painting Consortium☆160Updated last week
- ☆20Updated last year
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆15Updated last week
- Code for evaluating single cell foundation models scBERT and scGPT☆30Updated 2 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆34Updated 2 years ago
- CpG Transformer for imputation of single-cell methylomes☆37Updated last year
- ☆11Updated last year
- Discovering novel cell types across heterogenous single-cell experiments☆120Updated last year
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆98Updated last week