qiaoliuhub / AttnToCrisprLinks
☆13Updated 5 years ago
Alternatives and similar repositories for AttnToCrispr
Users that are interested in AttnToCrispr are comparing it to the libraries listed below
Sorting:
- CNN architecture for predicting DNA binding sites for Transcription Factors☆52Updated 6 years ago
- For anyone who are eager to applying deep learning in bioinformatics!☆124Updated 7 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆75Updated 3 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 6 years ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆136Updated 3 years ago
- Function prediction using a deep ontology-aware classifier☆85Updated 3 years ago
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 11 months ago
- ☆107Updated 7 years ago
- ☆59Updated 4 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆32Updated 5 months ago
- ☆59Updated 8 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 7 years ago
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- Cancer Drug Response prediction using a Recommender System☆43Updated 2 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Updated 8 years ago
- ☆70Updated 2 years ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Updated 4 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆21Updated 6 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- covolutional neural network based coexpression analysis☆79Updated 5 years ago
- Connectivity Map analysis in MATLAB☆46Updated 4 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 9 years ago
- ☆10Updated 5 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Updated last year
- TF MOtif Discovery from Importance SCOres☆161Updated 2 weeks ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆30Updated 3 years ago