Alternatives and similar repositories for AttnToCrispr:

Users that are interested in AttnToCrispr are comparing it to the libraries listed below

• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆27Updated 9 months ago
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 4 years ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆26Updated 2 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 7 years ago
• arefeen / DeepPASTA
  ☆10Updated 4 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆17Updated 2 years ago
• uci-cbcl / HLA-bind
  Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
  ☆25Updated 7 years ago
• QData / DeepDiffChrome
  "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,
  ☆20Updated 5 years ago
• zwang-bioinformatics / GOGO
  An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms
  ☆17Updated 4 years ago
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆61Updated 3 years ago
• kimmo1019 / Deopen
  A hybrid deep convolutional neural network for predicting chromatin accessibility
  ☆24Updated 5 years ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆35Updated 7 years ago
• zeochoy / tcga-embedding
  using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data
  ☆21Updated 6 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆49Updated 5 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated last year
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• mikejhuang / PhageProtVec
  Amino Acid Embedding Representation as Machine Learning Features
  ☆19Updated 6 years ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 5 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆38Updated last year
• MedChaabane / DeepBind-with-PyTorch
  CNN architecture for predicting DNA binding sites for Transcription Factors
  ☆49Updated 5 years ago
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated 2 months ago
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆16Updated 2 years ago
• p-koo / learning_sequence_motifs
  "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy
  ☆31Updated 5 years ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆26Updated last year
• ShenLab / missense
  MVP (Qi et al 2021) source code
  ☆15Updated 3 years ago
• cmap / cmapM
  Connectivity Map analysis in MATLAB
  ☆42Updated 3 years ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆30Updated 4 years ago