Alternatives and similar repositories for DSSPparser:

Users that are interested in DSSPparser are comparing it to the libraries listed below

• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 2 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆52Updated 2 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆81Updated 10 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 8 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆24Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆32Updated 2 years ago
• LPDI-EPFL / topobuilder
  Parametric Building of de novo Functional Topologies
  ☆44Updated 2 years ago
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆19Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆30Updated 6 years ago
• elaspic / elaspic2
  Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…
  ☆19Updated 3 years ago
• sarisabban / RosettaDesign
  RosettaDesign using PyRosetta
  ☆30Updated 5 years ago
• robpearc / DeepFoldRNA
  ☆28Updated last year
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆29Updated last year
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆25Updated this week
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆41Updated last month
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆31Updated 7 months ago
• Devil625 / Codon_Optimization
  https://www.nature.com/articles/s41598-020-74091-z#Tab1
  ☆40Updated 11 months ago
• realbigws / RaptorX_Property_Fast
  RaptorX-Property: a Standalone Package for Protein Structure Property Prediction
  ☆15Updated 5 years ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆34Updated 2 years ago
• sokrypton / map_align
  Contact map alignment
  ☆41Updated 4 years ago
• BrooksResearchGroup-UM / PEVAE_Paper
  Deciphering protein evolution and fitness landscapes with latent space models
  ☆32Updated 3 years ago
• DeepRank / PSSMGen
  Generates consistent PSSM and/or PDB files for protein-protein complexes
  ☆19Updated 2 years ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆21Updated 6 months ago
• Fleishman-Lab / CUMAb
  ☆19Updated 8 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated 2 weeks ago
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆43Updated 2 months ago