pymodproject / pymodLinks
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
☆82Updated 8 months ago
Alternatives and similar repositories for pymod
Users that are interested in pymod are comparing it to the libraries listed below
Sorting:
- scripts and facilities for in-silico mutagenesis with FoldX☆61Updated 4 months ago
- Set of useful HADDOCK utility scripts☆55Updated 2 months ago
- Python implementation of the Ramachandran plot☆53Updated 3 months ago
- Framework for the rapid modeling glycans and glycoproteins.☆31Updated 2 years ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputers☆70Updated last year
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆115Updated last year
- Direct coupling analysis software for protein and RNA sequences☆53Updated 3 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 7 months ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆108Updated last month
- Interactive Python notebooks for PDBe API training☆57Updated last month
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…☆86Updated this week
- Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.☆26Updated 3 years ago
- The DSSP building software☆47Updated 2 years ago
- an integrated tool for molecular docking and virtual screening☆74Updated 5 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆84Updated 3 weeks ago
- Create DSSP and HSSP files☆94Updated last year
- Python package to manage protein structures and their annotations☆44Updated last year
- PyDock Tutorial☆34Updated 7 years ago
- Pymol ScrIpt COllection (PSICO)☆62Updated 3 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- ☆54Updated 3 months ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆97Updated 2 years ago
- Analysis of alphafold and colabfold results☆32Updated last month
- An open-source library for the analysis of protein interactions.☆32Updated 3 years ago
- ☆33Updated last year
- Python interface for the RCSB PDB search API.☆65Updated 7 months ago
- Protein folding in Pymol☆124Updated 3 weeks ago
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆76Updated 7 months ago
- Predict the binding affinity of protein-protein complexes from structural data☆153Updated last month