pymodproject / pymod
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
☆76Updated last week
Alternatives and similar repositories for pymod:
Users that are interested in pymod are comparing it to the libraries listed below
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 2 months ago
- ☆49Updated 8 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆81Updated 10 months ago
- ☆28Updated 3 years ago
- PyDock Tutorial☆30Updated 6 years ago
- Set of useful HADDOCK utility scripts☆51Updated 5 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆85Updated 6 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆52Updated 2 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆41Updated last month
- A domain parser for Alphafold models☆34Updated last year
- ☆30Updated 11 months ago
- ☆82Updated last year
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆19Updated 3 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆119Updated 3 weeks ago
- Protein folding in Pymol☆104Updated last month
- Framework for the rapid modeling glycans and glycoproteins.☆29Updated last year
- Toolkit for alphafold3 input and output files☆62Updated 3 weeks ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆32Updated 2 years ago
- Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.☆26Updated 2 years ago
- ☆32Updated 2 years ago
- RosettaDesign using PyRosetta☆30Updated 5 years ago
- ☆100Updated 2 years ago
- pyFoldX: python bindings for FoldX.☆44Updated 3 years ago
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆59Updated 4 months ago
- Python implementation of the Ramachandran plot☆43Updated 5 years ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputers☆53Updated last year
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆34Updated 2 years ago
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- Parametric Building of de novo Functional Topologies☆44Updated 2 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆93Updated 2 weeks ago