pymodproject / pymodLinks
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
☆80Updated 3 months ago
Alternatives and similar repositories for pymod
Users that are interested in pymod are comparing it to the libraries listed below
Sorting:
- scripts and facilities for in-silico mutagenesis with FoldX☆57Updated 6 months ago
- Set of useful HADDOCK utility scripts☆52Updated 9 months ago
- ☆85Updated last year
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆103Updated 11 months ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputers☆62Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- Interactive Python notebooks for PDBe API training☆54Updated last week
- ☆31Updated 3 years ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆45Updated 2 weeks ago
- PyDock Tutorial☆32Updated 6 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Predict the binding affinity of protein-protein complexes from structural data☆137Updated 2 months ago
- ☆49Updated 2 months ago
- RosettaDesign using PyRosetta☆31Updated 5 years ago
- (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆69Updated last year
- Protein folding in Pymol☆109Updated 5 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆95Updated 2 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆42Updated 2 years ago
- AlphaFold-initiated replica exchange protein docking☆83Updated 3 weeks ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆59Updated 2 months ago
- A Consensus Docking Plugin for PyMOL☆73Updated last year
- The DSSP building software☆44Updated last year
- Framework for the rapid modeling glycans and glycoproteins.☆30Updated last year
- Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.☆26Updated 3 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆101Updated last month
- Pymol ScrIpt COllection (PSICO)☆59Updated last week
- MM-PBSA method for GROMACS. For full description, please visit homepage:☆67Updated 3 weeks ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆66Updated 10 months ago
- Analysis of alphafold and colabfold results☆28Updated 3 weeks ago