R package for quality control of plink genetic datasets
☆82Oct 13, 2026Updated 2 weeks ago
Alternatives and similar repositories for plinkQC
Users that are interested in plinkQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GTM and t-SNE classification and clustering of 1000 Genomes Project populations☆13Feb 18, 2019Updated 7 years ago
- ☆13May 16, 2016Updated 10 years ago
- Adding random effects model to the METAL software☆15Jun 11, 2023Updated 3 years ago
- The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation☆178Jun 3, 2026Updated 4 months ago
- ☆16Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A comprehensive tutorial about GWAS and PRS☆1,027Apr 1, 2023Updated 3 years ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆24Jan 25, 2023Updated 3 years ago
- R package for the analysis of massive SNP arrays.☆227Jul 10, 2026Updated 3 months ago
- Polygenic Risk Scores Extension for Diabetes Mellitus (PRSedm)☆14Apr 1, 2026Updated 6 months ago
- ☆12Sep 4, 2025Updated last year
- Read PLINK BED/BIM/FAM files into R☆44Jul 26, 2021Updated 5 years ago
- A tool for pangenome graph-based phased diploid genome inference.☆10Sep 19, 2026Updated last month
- Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improv…☆14Dec 2, 2024Updated last year
- LD Score Regression (LDSC)☆804Jan 16, 2026Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Visualization of Colocalization Between eQTL and GWAS Data☆90May 13, 2022Updated 4 years ago
- A set of easy-to-use functions to analyze end read count data of RiboMethSeq (RNA 2'Ome)☆11Sep 12, 2025Updated last year
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆119Sep 13, 2021Updated 5 years ago
- A high-throughput analysis framework for Y-chromosomal next-generation sequencing data☆19Jun 11, 2021Updated 5 years ago
- ☆22Jun 12, 2023Updated 3 years ago
- GENetic Effect-Size distribution Inference from Summary-level data☆16Sep 6, 2020Updated 6 years ago
- Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…☆87Sep 28, 2024Updated 2 years ago
- LDlinkR☆66Jun 22, 2026Updated 4 months ago
- GWAS Tutorial for Beginners☆491Aug 3, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A tool to build a website to browse hundreds or thousands of GWAS.☆199Apr 22, 2026Updated 6 months ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆12Jun 10, 2019Updated 7 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆39Jul 25, 2023Updated 3 years ago
- A comprehensive platform for population-scale genomic analyses☆10Apr 20, 2026Updated 6 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 7 months ago
- LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…☆25Oct 15, 2026Updated 2 weeks ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆101Dec 12, 2022Updated 3 years ago
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 11 months ago
- Ultrafast GPU-enabled QTL mapper☆218Jun 29, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Statistical methods for forest genetic resources analysts☆40Aug 10, 2026Updated 2 months ago
- ☆40Jun 15, 2023Updated 3 years ago
- Codebook from my GWAS cookbook☆196May 26, 2022Updated 4 years ago
- ☆34Aug 9, 2021Updated 5 years ago
- Fast Principal Component Analysis of Large-Scale Genome-Wide Data☆147Jul 26, 2022Updated 4 years ago
- ☆71Updated this week
- PopSTR - A Population based microsatellite genotyper☆33Oct 23, 2023Updated 3 years ago