meyer-lab-cshl / plinkQCLinks
R package for quality control of plink genetic datasets
☆60Updated last month
Alternatives and similar repositories for plinkQC
Users that are interested in plinkQC are comparing it to the libraries listed below
Sorting:
- Main ricopili repo for public releases☆49Updated 6 months ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆95Updated 8 months ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆68Updated 11 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- gwasrapidd: an R package to query, download and wrangle GWAS Catalog data☆99Updated 4 months ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated 2 years ago
- Read PLINK BED/BIM/FAM files into R☆41Updated 4 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 3 years ago
- LDlinkR☆60Updated last year
- ☆35Updated 2 years ago
- Scripts for implementing the Tractor pipeline☆51Updated last month
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆50Updated 7 months ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆52Updated 7 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆34Updated 3 months ago
- Make LocusZoom-like plots with your own LD matrix.☆45Updated 3 years ago
- Reading, querying and writing GWAS summary data in VCF format☆85Updated 4 months ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- Sequence kernel association test (SKAT)☆52Updated 2 months ago
- Pariwise analysis of GWAS☆44Updated 7 years ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- QTL Discovery using Annotations☆26Updated 2 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆67Updated last month
- Learn and validate subtypes from multiple traits☆20Updated 4 years ago
- Colocalization analysis of genetic association signals☆54Updated 3 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆55Updated 4 months ago
- LASSO for GWAS with summary statistics☆77Updated 5 years ago
- Easily download publicly available GWAS summary statistics.☆76Updated last year
- Every Gene Ever Annotated in published GWAS☆48Updated 2 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆41Updated 2 years ago
- Fuji plot—a circos representation of multiple GWAS results—☆91Updated 4 months ago