Alternatives and similar repositories for plinkQC:

Users that are interested in plinkQC are comparing it to the libraries listed below

• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆52Updated 5 months ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 7 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆49Updated 2 months ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆47Updated 3 weeks ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆36Updated last week
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆59Updated 6 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆51Updated 6 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆40Updated 3 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆51Updated 3 years ago
• ramiromagno / gwasrapidd
  gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
  ☆96Updated last year
• clagiamba / moloc
  ☆35Updated 4 years ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆40Updated 2 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆94Updated 2 months ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆42Updated last year
• CBIIT / LDlinkR
  LDlinkR
  ☆59Updated last year
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆37Updated 2 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 6 months ago
• neurogenetics / GWAS-pipeline
  This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…
  ☆41Updated 2 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆43Updated 2 months ago
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆26Updated 5 years ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆28Updated 11 months ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆39Updated last year
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆75Updated this week
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆72Updated this week
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago