R package for quality control of plink genetic datasets
☆80Mar 27, 2026Updated 5 months ago
Alternatives and similar repositories for plinkQC
Users that are interested in plinkQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GTM and t-SNE classification and clustering of 1000 Genomes Project populations☆13Feb 18, 2019Updated 7 years ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆24Jan 25, 2023Updated 3 years ago
- ☆12Sep 4, 2025Updated 11 months ago
- ☆13Jan 30, 2025Updated last year
- Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improv…☆14Dec 2, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Adding random effects model to the METAL software☆15Jun 11, 2023Updated 3 years ago
- ☆22Jun 12, 2023Updated 3 years ago
- ☆13May 16, 2016Updated 10 years ago
- A comprehensive tutorial about GWAS and PRS☆1,019Apr 1, 2023Updated 3 years ago
- ☆28Sep 24, 2020Updated 5 years ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆15Jun 15, 2026Updated 2 months ago
- A matrix-like wrapper around PLINK .bed files☆19Sep 6, 2024Updated last year
- ☆24Nov 27, 2024Updated last year
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Enhanced version of the FastQTL QTL mapper☆73Mar 19, 2023Updated 3 years ago
- LD Score Regression (LDSC)☆797Jan 16, 2026Updated 7 months ago
- Ultrafast GPU-enabled QTL mapper☆218Jun 29, 2025Updated last year
- Pipeline used to test for an enrichment of sweeps in a set of genes while controlling for confounding factors and with the option to run …☆18Apr 28, 2021Updated 5 years ago
- Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…☆86Sep 28, 2024Updated last year
- ☆61Jul 22, 2026Updated last month
- GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis☆30Mar 12, 2020Updated 6 years ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆198Apr 22, 2026Updated 4 months ago
- Enabling differential allele-specific analysis☆12Dec 28, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- LDlinkR☆65Jun 22, 2026Updated 2 months ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- Codebook from my GWAS cookbook☆196May 26, 2022Updated 4 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆16Aug 11, 2023Updated 3 years ago
- NTID Reproducible Data Analysis Workshop (March 25-29 2019)☆10Aug 27, 2019Updated 7 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- snpnet - Efficient Lasso Solver for Large-scale genetic variant data☆21Mar 5, 2024Updated 2 years ago
- The Data-Centered Data Flow manager for R☆19Aug 4, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13May 27, 2025Updated last year
- ☆12Apr 18, 2022Updated 4 years ago
- An R package for creating mirrored Manhattan plots☆19Sep 30, 2022Updated 3 years ago
- GENetic Effect-Size distribution Inference from Summary-level data☆15Sep 6, 2020Updated 5 years ago
- A comprehensive platform for population-scale genomic analyses☆10Apr 20, 2026Updated 4 months ago
- Fast HLA type inference from whole-genome data☆146Apr 3, 2025Updated last year
- ☆10Oct 18, 2021Updated 4 years ago