Alternatives and similar repositories for plinkQC:

Users that are interested in plinkQC are comparing it to the libraries listed below

• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆46Updated this week
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 6 months ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆51Updated 6 years ago
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆26Updated 5 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• clagiamba / moloc
  ☆34Updated 4 years ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆50Updated 3 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆59Updated 5 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆48Updated 2 months ago
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆40Updated 3 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆36Updated 3 weeks ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 5 months ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆64Updated 4 years ago
• MRCIEU / ariesmqtl
  Scripts to run mQTL analyses as described in the ARIES mQTL paper
  ☆9Updated 9 years ago
• hakyim / TO-DELETE-PrediXcan
  Code for the in-dev PrediXcan Project
  ☆27Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 4 months ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆44Updated 2 years ago
• joepickrell / gwas-pw
  Pariwise analysis of GWAS
  ☆43Updated 6 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆41Updated last year
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆81Updated 2 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆42Updated last month
• monogenea / GWAStutorial
  Genome-wide association studies tutorial 🧬
  ☆48Updated 5 years ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆39Updated 2 years ago
• weizhou0 / GATE
  ☆22Updated last year
• ramiromagno / gwasrapidd
  gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
  ☆96Updated last year
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago