meyer-lab-cshl / plinkQCLinks
R package for quality control of plink genetic datasets
☆59Updated this week
Alternatives and similar repositories for plinkQC
Users that are interested in plinkQC are comparing it to the libraries listed below
Sorting:
- gwasrapidd: an R package to query, download and wrangle GWAS Catalog data☆99Updated 5 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆69Updated last year
- An R package for performing STAAR procedure in whole-genome sequencing studies☆95Updated 9 months ago
- Main ricopili repo for public releases☆50Updated 7 months ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆47Updated 2 years ago
- LDlinkR☆62Updated last year
- ☆35Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 3 years ago
- Read PLINK BED/BIM/FAM files into R☆41Updated 4 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Updated last month
- Scripts for implementing the Tractor pipeline☆53Updated 2 months ago
- LASSO for GWAS with summary statistics☆78Updated 5 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆51Updated 8 months ago
- Make LocusZoom-like plots with your own LD matrix.☆47Updated 3 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 5 months ago
- R package to perform Bayesian Genome-Wide Association Studies☆41Updated 2 years ago
- Learn and validate subtypes from multiple traits☆20Updated 4 years ago
- Every Gene Ever Annotated in published GWAS☆49Updated 2 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆59Updated 3 weeks ago
- Sequence kernel association test (SKAT)☆52Updated 3 months ago
- Reading, querying and writing GWAS summary data in VCF format☆90Updated 5 months ago
- Statistical tools for Quantitative Genetic Analyses☆38Updated 2 months ago
- Colocalization analysis of genetic association signals☆53Updated 5 months ago
- ☆50Updated this week
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- Visualise correlation results and test significancies of these☆23Updated 5 years ago
- corrplot of LDSC genetic correlation results☆56Updated 3 years ago
- Genetics ToolboX R package☆32Updated 5 years ago