Alternatives and similar repositories for CSAMA

Users that are interested in CSAMA are comparing it to the libraries listed below

• Bioconductor / Contributions
  Contribute Packages to Bioconductor
  ☆145Updated 9 months ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆168Updated 6 months ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆122Updated 5 years ago
• tidyomics / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆176Updated 2 months ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆107Updated 2 years ago
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆96Updated 2 weeks ago
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆55Updated 2 years ago
• drisso / SingleCellExperiment
  Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…
  ☆75Updated 6 months ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆166Updated 3 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 11 months ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆69Updated 2 months ago
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆66Updated 2 years ago
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆138Updated last year
• thelovelab / rnaseqGene
  RNA-seq workflow: exploratory analysis and differential expression
  ☆81Updated 2 years ago
• Bioconductor / BiocWorkshops
  2018 Bioconductor Workshops
  ☆76Updated 6 years ago
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆161Updated last week
• kasperdanielhansen / genbioconductor
  Materials for Genomics Data Science: Introduction to Bioconductor
  ☆97Updated last year
• hbctraining / DGE_workshop_salmon
  ☆73Updated 4 years ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆198Updated last year
• hbctraining / versioning_data_scripts
  GitKraken lesson (forked from HBS-RCS)
  ☆10Updated 4 years ago
• biodatascience / compbio_src
  Introduction to Computational Biology - source Rmarkdown files
  ☆66Updated last year
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆98Updated last year
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆121Updated last year
• AlexsLemonade / training-modules
  A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
  ☆71Updated this week
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆84Updated 6 months ago
• crazyhottommy / The-world-of-faculty
  resources for faculty
  ☆219Updated 3 years ago
• hbctraining / main
  ☆57Updated this week
• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆124Updated this week
• federicomarini / awesome-expression-browser
  😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
  ☆142Updated 2 months ago
• Bioconductor / BiocIntro
  Course material for introductory R / Bioconductor courses
  ☆44Updated 2 years ago