pkerpedjiev / negspyLinks
Python NGS Repository
☆9Updated 9 months ago
Alternatives and similar repositories for negspy
Users that are interested in negspy are comparing it to the libraries listed below
Sorting:
- HiGlass track for displaying arcs between disconnected regions☆9Updated 2 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated last month
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 3 years ago
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆10Updated 3 months ago
- ☆13Updated last year
- Python bindings to UCSC BigWig and BigBed library☆33Updated last month
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32Updated 3 years ago
- Server component for HiGlass that manages and serves tiled data☆19Updated 2 years ago
- Red-C data processing☆15Updated 2 years ago
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- Processing and plotting tools for genomics data☆20Updated last week
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last year
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 2 months ago
- Blazing fast toolkit to work with .hic and .cool files☆29Updated last week
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated 11 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 8 months ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated last week
- HiCtrans is a pipeline to call translocations from Hi-C data☆15Updated 3 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- a minimal, scriptable genome browser for python☆51Updated 5 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- A toolkit for analyzing architectural stripes☆19Updated 6 months ago