pkerpedjiev / negspyLinks
Python NGS Repository
☆9Updated last year
Alternatives and similar repositories for negspy
Users that are interested in negspy are comparing it to the libraries listed below
Sorting:
- HiGlass track for displaying arcs between disconnected regions☆9Updated 2 years ago
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32Updated 3 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆40Updated 3 months ago
- Python bindings to UCSC BigWig and BigBed library☆33Updated 3 months ago
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆10Updated 6 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆59Updated 3 weeks ago
- Processing and plotting tools for genomics data☆21Updated 2 weeks ago
- Red-C data processing☆15Updated 2 years ago
- ☆13Updated last year
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 4 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 4 months ago
- Blazing fast toolkit to work with .hic and .cool files☆32Updated this week
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- Lightweight converter between hic and cool contact matrices.☆73Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- Server component for HiGlass that manages and serves tiled data☆20Updated 2 years ago
- ☆23Updated 5 years ago
- OLD REPOSITORY - Go to☆31Updated 7 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Architectural stripe detection from 3D genome conformation data☆18Updated 2 years ago
- a minimal, scriptable genome browser for python☆51Updated 7 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Updated 10 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Paired Genomic Loci Tool Suite☆31Updated 2 years ago
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated 2 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago