jackievaleri / BioAutoMATED
Automated machine learning for analyzing, interpreting, and designing biological sequences
☆166Updated last year
Related projects ⓘ
Alternatives and complementary repositories for BioAutoMATED
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆224Updated this week
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆230Updated this week
- Biological sequence analysis for the modern age.☆191Updated this week
- Unified biological sequence manipulation in Python☆207Updated 4 months ago
- RNA-seq prediction with deep convolutional neural networks.☆87Updated 2 weeks ago
- Genomic Pre-trained Network☆187Updated last month
- Deep networks for protein functional inference☆159Updated 2 weeks ago
- An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology☆251Updated 6 months ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆94Updated last year
- course material☆122Updated last year
- ☆176Updated 7 months ago
- A unifying framework for biomedical research knowledge graphs☆222Updated last week
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆36Updated last week
- Repository for mRNA Paper and CodonBERT publication.☆112Updated 4 months ago
- Explainable AI for Bioinformatics☆116Updated last year
- 🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics☆472Updated last month
- An Introduction to Applied Bioinformatics, 2nd Edition☆125Updated last year
- A data framework for biology.☆127Updated this week
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆96Updated last week
- This repository contains the python package for Helical☆62Updated this week
- Sequential regulatory activity predictions with deep convolutional neural networks.☆407Updated 5 months ago
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources☆38Updated 2 weeks ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆141Updated 3 months ago
- Native python implementation of SBOL 3.0 specification☆37Updated 7 months ago
- GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics☆117Updated 2 months ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆49Updated 3 months ago
- An AI Agent for Fully Automated Multi-omic Analyses☆109Updated this week
- LLMs for microplate data☆44Updated 3 weeks ago
- Benchmarks for classification of genomic sequences☆116Updated 8 months ago
- muon is a multimodal omics Python framework☆218Updated last week