jackievaleri / BioAutoMATED
Automated machine learning for analyzing, interpreting, and designing biological sequences
☆166Updated last year
Alternatives and similar repositories for BioAutoMATED:
Users that are interested in BioAutoMATED are comparing it to the libraries listed below
- RNA-seq prediction with deep convolutional neural networks.☆133Updated this week
- Biological sequence analysis for the modern age.☆211Updated last week
- Unified biological sequence manipulation in Python☆208Updated 9 months ago
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆165Updated 3 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆280Updated this week
- Repository for mRNA Paper and CodonBERT publication.☆126Updated 9 months ago
- Protein 3D structure prediction pipeline☆76Updated this week
- An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology☆256Updated 11 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆251Updated last week
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆94Updated last year
- Explainable AI for Bioinformatics☆121Updated last year
- Deep networks for protein functional inference☆168Updated 2 weeks ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆57Updated 8 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆59Updated 2 months ago
- course material☆126Updated 2 years ago
- Pretraining infrastructure for multi-hybrid AI model architectures☆129Updated 2 weeks ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆176Updated 2 weeks ago
- Native python implementation of SBOL 3.0 specification☆38Updated this week
- ☆71Updated last year
- Genomic Pre-trained Network☆254Updated last week
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…☆70Updated last year
- Install alphafold on the local machine, get out of docker.☆101Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆167Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆71Updated 2 months ago
- DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …☆235Updated 2 weeks ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆154Updated 6 months ago
- A unifying framework for biomedical research knowledge graphs☆247Updated this week
- An open-access bioinformatics text☆109Updated last week
- The generic genome-scale metabolic model of Homo sapiens☆107Updated 3 weeks ago
- Machine learning methods for DNA sequence analysis.☆37Updated this week