jackievaleri / BioAutoMATEDLinks
Automated machine learning for analyzing, interpreting, and designing biological sequences
☆171Updated 2 years ago
Alternatives and similar repositories for BioAutoMATED
Users that are interested in BioAutoMATED are comparing it to the libraries listed below
Sorting:
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆269Updated last month
- An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology☆263Updated last year
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆141Updated this week
- Unified biological sequence manipulation in Python☆207Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆71Updated 2 weeks ago
- RNA-seq prediction with deep convolutional neural networks.☆185Updated last month
- Genomic Pre-trained Network☆273Updated 3 weeks ago
- Deep networks for protein functional inference☆176Updated last month
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆95Updated 2 years ago
- Backend library for conversational AI in biomedicine☆171Updated 3 weeks ago
- Explainable AI for Bioinformatics☆125Updated 2 years ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆283Updated last month
- The light frontend for BioChatter, in pure Python☆54Updated 3 weeks ago
- A unifying framework for biomedical research knowledge graphs☆259Updated this week
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆87Updated last month
- Biological sequence analysis for the modern age.☆231Updated 2 weeks ago
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆174Updated 2 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆122Updated 9 months ago
- Protein 3D structure prediction pipeline☆84Updated last week
- Repository for mRNA Paper and CodonBERT publication.☆133Updated last year
- ☆581Updated last year
- Deep learning infrastructure for genomics☆258Updated 3 years ago
- Benchmarks for classification of genomic sequences☆150Updated last week
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources☆44Updated last week
- a python bioinformatics framework☆165Updated last week
- Multi-Scale Integrated Cell☆35Updated 2 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- A Python-based compendium of GPU-optimized aging clocks.☆100Updated 2 months ago
- An Introduction to Applied Bioinformatics, 2nd Edition☆139Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year