Assessing the impact of mutations on antibody-antigen binding affinity
☆18Dec 7, 2020Updated 5 years ago
Alternatives and similar repositories for antibody-mutations
Users that are interested in antibody-mutations are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Material to run the HADDOCK antibody-antigen modelling protocol☆23Apr 13, 2026Updated 6 months ago
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆18Dec 17, 2021Updated 4 years ago
- Antibody-Antigen Docking and Affinity Benchmark☆78Nov 17, 2020Updated 5 years ago
- Machine learning models for antibody sequences in PyTorch☆41May 25, 2021Updated 5 years ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scores for Hydrophobicity and Charges based on SASAs☆48Jun 12, 2025Updated last year
- The official implementation of "Improving Antibody Humanness Prediction using Patent Data".☆14Feb 14, 2024Updated 2 years ago
- Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide☆30Mar 30, 2023Updated 3 years ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆14Apr 23, 2024Updated 2 years ago
- ☆12Jan 2, 2021Updated 5 years ago
- analyze 1D (e)ABF simulation in NAMD☆11Nov 12, 2018Updated 7 years ago
- ☆14Jan 11, 2022Updated 4 years ago
- Modeling the effects of mutations in proteins using PyRosetta☆27Jan 26, 2018Updated 8 years ago
- Physical energy function for ddG prediction upon amino acid mutation☆15May 7, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆32Oct 6, 2022Updated 4 years ago
- ☆32Aug 26, 2025Updated last year
- Machine learning-driven antibody design☆66Jul 5, 2023Updated 3 years ago
- Visual Molecular Dynamics in Docker Container☆12Jan 1, 2015Updated 11 years ago
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model☆16Jun 4, 2024Updated 2 years ago
- ☆16Aug 3, 2023Updated 3 years ago
- Tools for data analysis for the FDA Adverse Event Reporting System (FAERS) dataset☆47Oct 16, 2019Updated 7 years ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆17Sep 27, 2022Updated 4 years ago
- TPepPro: a deep learning model for predicting peptide-protein interactions☆15Jun 25, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆56Nov 14, 2023Updated 2 years ago
- Protein-protein binding affinity benchmark☆20Feb 14, 2025Updated last year
- Some of useful tcl scripts to analyse data from VMD☆16Aug 2, 2022Updated 4 years ago
- An open-source platform for developing protein models beyond AlphaFold.☆11Jul 15, 2025Updated last year
- Open Source, Automated free binding free energy calculation between protein and small molecule. An all-in-one workflow, free energy pertu…☆59Apr 21, 2025Updated last year
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Apr 27, 2023Updated 3 years ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆16Sep 8, 2023Updated 3 years ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆69Aug 2, 2026Updated 3 months ago
- ☆77Sep 2, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"☆13Oct 21, 2026Updated 2 weeks ago
- Tools for creating, analyzing and visualizing Conformation Space Networks☆18May 26, 2026Updated 5 months ago
- A Collection of Platform, Tools, and Resources for Antibody Engineering☆22Aug 5, 2026Updated 3 months ago
- Script tools for downloading, data preprocessing, data merging and standardizing for FDA Adverse Event Reporting System(FAERS) dataset.☆41Apr 4, 2019Updated 7 years ago
- De novo drug design with deep interactome learning☆21Mar 19, 2026Updated 7 months ago
- Lightweight induced fit docking☆22May 22, 2023Updated 3 years ago
- ☆12Aug 29, 2019Updated 7 years ago