choderalab / antibody-mutationsView external linksLinks
Assessing the impact of mutations on antibody-antigen binding affinity
☆18Dec 7, 2020Updated 5 years ago
Alternatives and similar repositories for antibody-mutations
Users that are interested in antibody-mutations are comparing it to the libraries listed below
Sorting:
- Antibody-Antigen Docking and Affinity Benchmark☆76Nov 17, 2020Updated 5 years ago
- Machine learning models for antibody sequences in PyTorch☆41May 25, 2021Updated 4 years ago
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆18Dec 17, 2021Updated 4 years ago
- Material to run the HADDOCK antibody-antigen modelling protocol☆23Feb 3, 2026Updated 2 weeks ago
- Visual Molecular Dynamics in Docker Container☆12Jan 1, 2015Updated 11 years ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆29Oct 6, 2022Updated 3 years ago
- ☆11Jan 2, 2021Updated 5 years ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 3 years ago
- ☆13Jan 5, 2026Updated last month
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆13Apr 23, 2024Updated last year
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆15Sep 27, 2022Updated 3 years ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆55Nov 14, 2023Updated 2 years ago
- Machine learning-driven antibody design☆63Jul 5, 2023Updated 2 years ago
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model☆15Jun 4, 2024Updated last year
- ☆14Jan 11, 2022Updated 4 years ago
- Tools for creating, analyzing and visualizing Conformation Space Networks☆17Aug 31, 2022Updated 3 years ago
- PCA and normal mode analysis of proteins☆20May 16, 2024Updated last year
- MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules☆21Mar 21, 2025Updated 10 months ago
- Tools for data analysis for the FDA Adverse Event Reporting System (FAERS) dataset☆44Oct 16, 2019Updated 6 years ago
- Some of useful tcl scripts to analyse data from VMD☆15Aug 2, 2022Updated 3 years ago
- A Collection of Platform, Tools, and Resources for Antibody Engineering☆21Jun 30, 2023Updated 2 years ago
- Robust and stable clustering of molecular dynamics simulation trajectories.☆19Sep 2, 2022Updated 3 years ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆65Nov 26, 2025Updated 2 months ago
- Container-based installation of pymol, with interaction through the browser via Jupyter notebook☆20May 22, 2019Updated 6 years ago
- ☆74Sep 2, 2020Updated 5 years ago
- SMARTS: 'regular expressions' for chemical structures☆21Jun 21, 2018Updated 7 years ago
- ☆32Mar 18, 2025Updated 10 months ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Apr 27, 2023Updated 2 years ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Oct 24, 2023Updated 2 years ago
- Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-…☆46Aug 19, 2024Updated last year
- Generate and perturb protein structural ensembles using the ExProSE algorithm☆23Oct 23, 2024Updated last year
- ☆51Aug 21, 2023Updated 2 years ago
- ☆28Aug 26, 2025Updated 5 months ago
- Simple Molecular Dynamics code for Discovery-Driven approach to real gas properties.☆24Aug 23, 2022Updated 3 years ago
- Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide☆25Mar 30, 2023Updated 2 years ago
- Lightweight induced fit docking☆21May 22, 2023Updated 2 years ago
- Open Source, Automated free binding free energy calculation between protein and small molecule. An all-in-one workflow, free energy pertu…☆59Apr 21, 2025Updated 9 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Jul 9, 2024Updated last year
- Implementation of the Kdeep Paper☆21Feb 18, 2021Updated 4 years ago