Assessing the impact of mutations on antibody-antigen binding affinity
☆18Dec 7, 2020Updated 5 years ago
Alternatives and similar repositories for antibody-mutations
Users that are interested in antibody-mutations are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Antibody-Antigen Docking and Affinity Benchmark☆78Nov 17, 2020Updated 5 years ago
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆18Dec 17, 2021Updated 4 years ago
- Machine learning models for antibody sequences in PyTorch☆41May 25, 2021Updated 5 years ago
- Material to run the HADDOCK antibody-antigen modelling protocol☆23Apr 13, 2026Updated 6 months ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆11Jan 2, 2021Updated 5 years ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆14Apr 23, 2024Updated 2 years ago
- ☆14Jan 11, 2022Updated 4 years ago
- Machine learning-driven antibody design☆65Jul 5, 2023Updated 3 years ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆32Oct 6, 2022Updated 4 years ago
- Tools for data analysis for the FDA Adverse Event Reporting System (FAERS) dataset☆47Oct 16, 2019Updated 7 years ago
- Visual Molecular Dynamics in Docker Container☆12Jan 1, 2015Updated 11 years ago
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model☆16Jun 4, 2024Updated 2 years ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆56Nov 14, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆17Sep 27, 2022Updated 4 years ago
- Open Source, Automated free binding free energy calculation between protein and small molecule. An all-in-one workflow, free energy pertu…☆59Apr 21, 2025Updated last year
- TPepPro: a deep learning model for predicting peptide-protein interactions☆15Jun 25, 2024Updated 2 years ago
- Some of useful tcl scripts to analyse data from VMD☆16Aug 2, 2022Updated 4 years ago
- Tools for creating, analyzing and visualizing Conformation Space Networks☆18May 26, 2026Updated 4 months ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Apr 27, 2023Updated 3 years ago
- ☆77Sep 2, 2020Updated 6 years ago
- An open-source platform for developing protein models beyond AlphaFold.☆11Jul 15, 2025Updated last year
- ☆15Jan 5, 2026Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆69Aug 2, 2026Updated 2 months ago
- Script tools for downloading, data preprocessing, data merging and standardizing for FDA Adverse Event Reporting System(FAERS) dataset.☆41Apr 4, 2019Updated 7 years ago
- Scores for Hydrophobicity and Charges based on SASAs☆47Jun 12, 2025Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Oct 24, 2023Updated 2 years ago
- Protein design and variant prediction using autoregressive generative models☆124Jan 23, 2024Updated 2 years ago
- A Collection of Platform, Tools, and Resources for Antibody Engineering☆22Aug 5, 2026Updated 2 months ago
- ☆52Aug 21, 2023Updated 3 years ago
- Simple Molecular Dynamics code for Discovery-Driven approach to real gas properties.☆27Oct 2, 2026Updated 2 weeks ago
- Generate and perturb protein structural ensembles using the ExProSE algorithm☆24Oct 23, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"☆13Mar 28, 2021Updated 5 years ago
- Jupyter Notebooks for Molecular Dynamics☆44Jul 13, 2025Updated last year
- Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-…☆49Aug 19, 2024Updated 2 years ago
- ☆12Aug 29, 2019Updated 7 years ago
- Lightweight induced fit docking☆22May 22, 2023Updated 3 years ago
- Robust and stable clustering of molecular dynamics simulation trajectories.☆20Sep 2, 2022Updated 4 years ago
- MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules☆23Mar 21, 2025Updated last year