MattMcPartlon / protein-dockingView external linksLinks
Code for "A Deep Learning Framework for Flexible Docking and Design"
☆16Sep 29, 2022Updated 3 years ago
Alternatives and similar repositories for protein-docking
Users that are interested in protein-docking are comparing it to the libraries listed below
Sorting:
- The MULTICOM protein structure system. This repository includes the source code and documents of both template-based and template-free mo…☆17Nov 2, 2021Updated 4 years ago
- Protein generative model conditioned on Gene Ontology terms☆35Jul 17, 2022Updated 3 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- ☆10Nov 10, 2023Updated 2 years ago
- ☆11Aug 5, 2020Updated 5 years ago
- ☆11Jan 2, 2021Updated 5 years ago
- Energy-based Graph Convolutional Networks for Scoring Protein Docking Models☆12Aug 31, 2021Updated 4 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Jul 5, 2025Updated 7 months ago
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆14Aug 31, 2024Updated last year
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated 11 months ago
- iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…☆31Jun 25, 2022Updated 3 years ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Jul 29, 2024Updated last year
- De novo design of small molecule binding sites into proteins☆12Apr 14, 2021Updated 4 years ago
- ☆130Sep 5, 2022Updated 3 years ago
- LigTMap currently supports prediction for 17 protein target classes that include 6000+ protein targets.☆16Feb 20, 2021Updated 4 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16May 2, 2021Updated 4 years ago
- protein docking using a density-based descriptor for atoms charge and dynamics☆14Nov 17, 2022Updated 3 years ago
- Cross-protein transfer learning for variant effect prediction☆20Sep 13, 2023Updated 2 years ago
- ☆108Apr 1, 2023Updated 2 years ago
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- Emap2sec is a computational tool to identify protein secondary structures☆16Jul 31, 2024Updated last year
- Antibody-Antigen Docking and Affinity Benchmark☆76Nov 17, 2020Updated 5 years ago
- ☆18Apr 11, 2023Updated 2 years ago
- ☆65Sep 14, 2023Updated 2 years ago
- Protein-Protein Docking using Genetic Algorithm☆19Feb 2, 2026Updated last week
- Flow-matching for coarse graining of miniproteins.☆19Nov 18, 2022Updated 3 years ago
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆35Feb 23, 2021Updated 4 years ago
- ☆74Sep 2, 2020Updated 5 years ago
- protein docking stuff☆52Sep 2, 2024Updated last year
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆21Sep 17, 2018Updated 7 years ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆20Apr 5, 2024Updated last year
- ☆19Jun 10, 2024Updated last year
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆364Nov 7, 2025Updated 3 months ago
- An antibody-specific language model focusing on NGL prediction☆25Mar 8, 2025Updated 11 months ago
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Jun 26, 2022Updated 3 years ago
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆21Jan 17, 2024Updated 2 years ago
- Deep learning prediction of protein residue-residue distances☆23Jun 28, 2022Updated 3 years ago