MattMcPartlon / protein-dockingLinks
Code for "A Deep Learning Framework for Flexible Docking and Design"
☆16Updated 3 years ago
Alternatives and similar repositories for protein-docking
Users that are interested in protein-docking are comparing it to the libraries listed below
Sorting:
- Implementation of Protein Invariant Point Packer (PIPPack)☆35Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated last year
- ☆33Updated last year
- Versatile human antibody sequence design☆20Updated 5 months ago
- dMaSIF implementation for google colab☆34Updated 2 years ago
- ☆20Updated 4 years ago
- The code for NeurIPS 2023 paper DSR☆13Updated 2 years ago
- iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…☆31Updated 3 years ago
- Improving protein–ligand docking and screening accuracies by incorporating a scoring function correction term☆29Updated 11 months ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Updated 2 months ago
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆37Updated 4 years ago
- ☆39Updated last year
- ☆25Updated 3 years ago
- ☆12Updated 11 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- ☆20Updated 3 years ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Updated last year
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- Tool for modelling the CDRs of antibodies☆33Updated 3 years ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆27Updated 2 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated 2 years ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆49Updated last month
- Docking Tool Benchmarking Workflow☆24Updated last year
- ☆26Updated 2 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆29Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year