kiharalab / GNN_DOVELinks
Code for "Protein Docking Model Evaluation by Graph Neural Networks"
☆59Updated 2 years ago
Alternatives and similar repositories for GNN_DOVE
Users that are interested in GNN_DOVE are comparing it to the libraries listed below
Sorting:
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated 2 months ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- Code for our paper "Protein sequence design with a learned potential"☆80Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- Protein-protein interaction sites prediction through combining local and global features with deep neural networks☆54Updated 6 years ago
- A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction☆61Updated 4 years ago
- ☆107Updated 2 years ago
- Antibody-Antigen Docking and Affinity Benchmark☆73Updated 5 years ago
- ☆42Updated 2 years ago
- Open source code for AlphaFold.☆39Updated 2 years ago
- Predicting protein-ligand binding sites using deep convolutional neural network☆50Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Database of Interacting Protein Structures (DIPS)☆102Updated last year
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- ☆41Updated 2 months ago
- A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction☆81Updated 5 years ago
- ☆35Updated 4 years ago
- Official repository of EnzymeFlow☆95Updated 11 months ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆55Updated 11 months ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- ☆114Updated 2 years ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆48Updated 3 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆49Updated last month
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- A Python 3 version of the protein descriptor package propy☆46Updated 2 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Updated 4 years ago