kiharalab / GNN_DOVE
Code for "Protein Docking Model Evaluation by Graph Neural Networks"
☆59Updated last year
Alternatives and similar repositories for GNN_DOVE:
Users that are interested in GNN_DOVE are comparing it to the libraries listed below
- ☆106Updated 2 years ago
- Antibody-Antigen Docking and Affinity Benchmark☆71Updated 4 years ago
- Diffusion model based protein-ligand flexible docking method☆105Updated 6 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆36Updated 2 years ago
- Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction☆33Updated last year
- Official repository of EnzymeFlow☆89Updated 5 months ago
- ☆103Updated 2 years ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆115Updated last month
- Interpretable AI pipeline improving binding predictions for novel protein targets and ligands☆38Updated last year
- Predicting protein-ligand binding sites using deep convolutional neural network☆49Updated 7 months ago
- ☆110Updated 2 years ago
- Official repository of GENzyme☆49Updated 5 months ago
- ☆40Updated last year
- Open source code for AlphaFold.☆39Updated 2 years ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆59Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆98Updated 7 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 3 months ago
- ☆86Updated 2 years ago
- ☆125Updated last year
- ☆80Updated last year
- ☆82Updated 7 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated last year
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- Database of Interacting Protein Structures (DIPS)☆99Updated last year
- An accurate and trainable end-to-end protein-ligand docking framework☆88Updated last month
- A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction☆80Updated 4 years ago
- Official repository of ReactZyme☆30Updated 7 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆104Updated 2 months ago
- Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide☆22Updated 2 years ago
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆34Updated 4 years ago