Systematic Cophylogeny Reconciliation Tool under Duplication-Transfer-Loss Model.
☆15Sep 27, 2024Updated last year
Alternatives and similar repositories for empress
Users that are interested in empress are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 7 years ago
- R package to run BEAST2☆11Dec 8, 2025Updated 5 months ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆13Sep 26, 2017Updated 8 years ago
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 9 years ago
- ☆18Apr 28, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow☆22Jan 13, 2026Updated 4 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- A powerful Perl module for simulating the genome digestions by restriction enzymes☆14Sep 10, 2024Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- ☆20Jun 15, 2024Updated last year
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆12Oct 5, 2025Updated 7 months ago
- Telomere compliment tools☆26Nov 17, 2025Updated 6 months ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated last month
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- Taxonomy-aware DNA sequence processing toolkit☆34May 13, 2026Updated 2 weeks ago
- Gene tree - species tree reconciliation from gene tree distributions☆41Apr 30, 2026Updated 3 weeks ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 11 months ago
- ☆27May 12, 2026Updated 2 weeks ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆25Jan 8, 2026Updated 4 months ago
- Identifying viruses from metagenomic data by deep learning☆155May 5, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- VRV Plugin for Kodi☆10Jul 8, 2022Updated 3 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- DarkHorse2 source code☆11May 3, 2022Updated 4 years ago
- ☆21Jan 13, 2026Updated 4 months ago
- BioBTree v2: An MCP-enabled biomedical graph database unifying 50+ datasets.☆16May 14, 2026Updated 2 weeks ago
- R package for mapping country data☆28Oct 15, 2023Updated 2 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 6 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21Jan 13, 2026Updated 4 months ago
- Plex nginx reverse proxy configuration☆15Mar 23, 2025Updated last year
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 4 months ago
- Programming in GIS (GEOG-503)☆12Nov 4, 2018Updated 7 years ago
- Chrome/Firefox extension for pen-testing to retrieve encryption keys of Widevine protected content !DON'T DECRYPT CONTENT UNLESS YOU HAVE…☆13May 7, 2025Updated last year
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆291Nov 28, 2024Updated last year