Systematic Cophylogeny Reconciliation Tool under Duplication-Transfer-Loss Model.
☆16Sep 27, 2024Updated last year
Alternatives and similar repositories for empress
Users that are interested in empress are comparing it to the libraries listed below
Sorting:
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- Analyzer of Gene and Species Trees☆10Aug 8, 2016Updated 9 years ago
- ☆20Jun 15, 2024Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- An RNA virus strain-level identification tool for short reads.☆23Jan 29, 2026Updated last month
- ☆16Aug 17, 2023Updated 2 years ago
- An R package with toolkits for tong's friends☆11Mar 18, 2025Updated 11 months ago
- Taxonomy-aware DNA sequence processing toolkit☆33Feb 23, 2026Updated 2 weeks ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Apr 2, 2021Updated 4 years ago
- R package for mapping country data☆28Oct 15, 2023Updated 2 years ago
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆14Updated this week
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 6 years ago
- Flutrack platform gathers flu related tweets from the entire world, with searching tag, words that are influenza synonyms and flu symptom…☆13Apr 22, 2019Updated 6 years ago
- Exploring the "dusk matter" of the RNA virosphere☆37Mar 25, 2022Updated 3 years ago
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…☆34Nov 6, 2024Updated last year
- Postprocessing gadgets for output generated by RevBayes☆14Feb 22, 2026Updated 2 weeks ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆12Feb 6, 2026Updated last month
- This package aims to generate phylogenetic trees for a list of species of plants or animals, based on an existent backbone phylogeny.☆13Nov 20, 2024Updated last year
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Functions for statistical estimation with pooled or grouped binary data☆10Jan 5, 2024Updated 2 years ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecula…☆11Feb 19, 2026Updated 2 weeks ago
- ☆16Jan 14, 2026Updated last month
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Jul 23, 2025Updated 7 months ago
- This is a phylogeny workflow for batch submission to HPC cluster built with Slurm queue manager☆10Mar 19, 2024Updated last year
- GPU-enabled docker container with Jupyterlab for artificial intelligence☆10Aug 11, 2023Updated 2 years ago
- phylogenetic networks using ggplot2 and ggtree☆11Oct 22, 2025Updated 4 months ago
- Alwaysnote is an Evernote clone using vuejs, tailwind css, and FastAPI☆14Jan 4, 2023Updated 3 years ago
- ☆10Dec 22, 2025Updated 2 months ago
- Xiangyun's personal website☆11Updated this week
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 10 months ago
- A powerful Perl module for simulating the genome digestions by restriction enzymes☆14Sep 10, 2024Updated last year
- Platform for running games of Dix opposing computer programs and/or humans☆11Mar 4, 2024Updated 2 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 3 years ago