Systematic Cophylogeny Reconciliation Tool under Duplication-Transfer-Loss Model.
☆15Sep 27, 2024Updated last year
Alternatives and similar repositories for empress
Users that are interested in empress are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ancestral Sequence Reconstruction in Python☆14May 9, 2019Updated 6 years ago
- R package to run BEAST2☆11Dec 8, 2025Updated 3 months ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- Analyzer of Gene and Species Trees☆10Aug 8, 2016Updated 9 years ago
- ☆17Jan 14, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow☆21Jan 13, 2026Updated 2 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…☆34Nov 6, 2024Updated last year
- A powerful Perl module for simulating the genome digestions by restriction enzymes☆14Sep 10, 2024Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- ☆20Jun 15, 2024Updated last year
- Telomere compliment tools☆28Nov 17, 2025Updated 4 months ago
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆12Oct 5, 2025Updated 5 months ago
- An RNA virus strain-level identification tool for short reads.☆23Mar 18, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated 7 months ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- Taxonomy-aware DNA sequence processing toolkit☆34Feb 23, 2026Updated last month
- ☆24Updated this week
- Gene tree - species tree reconciliation from gene tree distributions☆38Mar 13, 2026Updated 2 weeks ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Oct 16, 2024Updated last year
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 9 months ago
- Identifying viruses from metagenomic data by deep learning☆150Jun 1, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Jan 8, 2026Updated 2 months ago
- VRV Plugin for Kodi☆10Jul 8, 2022Updated 3 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- DarkHorse2 source code☆10May 3, 2022Updated 3 years ago
- ☆21Jan 13, 2026Updated 2 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆23Apr 25, 2024Updated last year
- Annotation Pipeline for NLR genes☆16Dec 6, 2018Updated 7 years ago
- a gap-filling tools of genome in complex region.☆25Dec 30, 2025Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- BioBTree v2: An MCP-enabled biomedical graph database unifying 50+ datasets.☆16Mar 18, 2026Updated last week
- R package for mapping country data☆28Oct 15, 2023Updated 2 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- ☆21Jan 13, 2026Updated 2 months ago
- Plex nginx reverse proxy configuration☆15Mar 23, 2025Updated last year
- Programming in GIS (GEOG-503)☆12Nov 4, 2018Updated 7 years ago
- Chrome/Firefox extension for pen-testing to retrieve encryption keys of Widevine protected content !DON'T DECRYPT CONTENT UNLESS YOU HAVE…☆12May 7, 2025Updated 10 months ago