Systematic Cophylogeny Reconciliation Tool under Duplication-Transfer-Loss Model.
☆15Sep 27, 2024Updated last year
Alternatives and similar repositories for empress
Users that are interested in empress are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to run BEAST2☆11Dec 8, 2025Updated 6 months ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆13Sep 26, 2017Updated 8 years ago
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 9 years ago
- ☆18Apr 28, 2026Updated last month
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow☆23Jun 3, 2026Updated 2 weeks ago
- A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…☆34Nov 6, 2024Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- ☆20Jun 15, 2024Updated 2 years ago
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆12Oct 5, 2025Updated 8 months ago
- Telomere compliment tools☆26Nov 17, 2025Updated 7 months ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 2 months ago
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated 9 months ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Gene tree - species tree reconciliation from gene tree distributions☆41Apr 30, 2026Updated last month
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 11 months ago
- ☆28May 12, 2026Updated last month
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆25Jan 8, 2026Updated 5 months ago
- Identifying viruses from metagenomic data by deep learning☆154May 5, 2026Updated last month
- VRV Plugin for Kodi☆10Jul 8, 2022Updated 3 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DarkHorse2 source code☆11May 3, 2022Updated 4 years ago
- Annotation Pipeline for NLR genes☆16Dec 6, 2018Updated 7 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆24Apr 25, 2024Updated 2 years ago
- R package for mapping country data☆28Oct 15, 2023Updated 2 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 6 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- ☆21Jan 13, 2026Updated 5 months ago
- Plex nginx reverse proxy configuration☆15Mar 23, 2025Updated last year
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BioBTree v2: An MCP-enabled biomedical graph database unifying 70+ datasets.☆17Updated this week
- Programming in GIS (GEOG-503)☆12Nov 4, 2018Updated 7 years ago
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆293Nov 28, 2024Updated last year
- This is the GitHub repository accompanying Krishnan, Anahtar, Valeri, et al., 2025☆38Jun 8, 2025Updated last year
- Dynamic Elongation of a Genome Assembly Path☆25Apr 29, 2026Updated last month
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆13Oct 31, 2025Updated 7 months ago