Alternatives and similar repositories for OpEx:

Users that are interested in OpEx are comparing it to the libraries listed below

• raphael-group / NAIBR
  Novel Adjacency Identification with Barcoded Reads
  ☆13Updated 2 years ago
• quinlan-lab / ccrhtml
  A small repo for storing the code for making the files and html for CCRs.
  ☆22Updated 5 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆21Updated 6 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 2 years ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 4 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• sbg / smart-variant-filtering
  ☆30Updated 4 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆33Updated 3 months ago
• Yandell-Lab / VVP-pub
  VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
  ☆19Updated 7 years ago
• cbare / vcf2maf
  Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)
  ☆14Updated 8 years ago
• InscriptaLabs / BioCantor
  ☆21Updated last year
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆10Updated 4 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 7 months ago
• lkuchenb / MultiHLA
  WES HLA Typing based on multiple alternative tools
  ☆15Updated 4 years ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 5 months ago
• raulossio / VCF-plotein
  Visualisation and prioritisation of genomic variants from human exome sequencing projects
  ☆13Updated 5 years ago
• lh3 / unicall
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆13Updated 5 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated last year
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• talkowski-lab / rCNV2
  Aggregation and analyses of rare CNVs across diseases
  ☆14Updated 2 years ago
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆17Updated 8 years ago
• NDBL / HECIL
  Hybrid Error Correction of Long Reads using Iterative Learning
  ☆10Updated 6 years ago
• refresh-bio / GTC
  GenoTypes Compressor
  ☆15Updated 2 years ago
• crukci-bioinformatics / MGA
  The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.
  ☆25Updated 3 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 3 years ago
• solvebio / veppy
  Variant Effect Prediction for Python
  ☆15Updated 7 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• quinlan-lab / bedqc
  BED QC tool (in the making)
  ☆16Updated 2 years ago
• genomics-dev / wecall
  Fast, accurate and simple to use command line tool for variant detection in NGS data.
  ☆10Updated 5 years ago