Alternatives and similar repositories for DeepMSPeptide:

Users that are interested in DeepMSPeptide are comparing it to the libraries listed below

• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆9Updated 3 years ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆28Updated 8 months ago
• pattilab / DecoID
  Metabolomics software for database-assisted deconvolution of MS/MS spectra
  ☆18Updated last year
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆19Updated 9 months ago
• ZhuMSLab / DecoMetDIA
  ☆11Updated 2 years ago
• PHOENIXcenter / deeprtalign
  a deep learning-based retention time alignment tool for large cohort LC-MS data analysis
  ☆11Updated last year
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• ODonnell-Lipidomics / LipidFinder
  LipidFinder: A computational workflow for discovery of new lipid molecular species
  ☆19Updated 4 years ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated last week
• computational-metabolomics / msPurity
  R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
  ☆16Updated 10 months ago
• cbroeckl / RAMClustR
  Assigning precursor-product ion relationships in indiscriminant MS/MS data
  ☆12Updated 10 months ago
• dphansti / CORAL
  ☆28Updated 2 years ago
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆14Updated last year
• ZhuMetLab / MetDNA2
  Knowledge-guided multilayer network approach is executed in MetDNA2
  ☆16Updated 2 years ago
• alexandrovteam / curatr
  ☆14Updated 2 years ago
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆25Updated last year
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆24Updated 4 months ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆24Updated last year
• WMBEdmands / compMS2Miner
  metabolite identification R-package for metabolomic high-resolution LC-MS datasets.
  ☆14Updated 7 years ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• markmipt / ms1searchpy
  ☆10Updated last week
• eMetaboHUB / MS-CleanR
  ☆25Updated last year
• Nextflow4Metabolomics / nextflow4ms-dial
  Nextflow-powered MS-DIAL
  ☆10Updated 2 months ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆40Updated 10 months ago
• RogerGinBer / RHermes
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆25Updated last week
• MRMkit / MRMkit
  ☆8Updated 6 months ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆27Updated last year
• zhengfj1994 / MetEx
  MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.
  ☆16Updated last year
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• ipb-halle / MetFragRelaunched
  Relaunch of the initial MetFrag project.
  ☆18Updated this week