Alternatives and similar repositories for DeepMSPeptide:

Users that are interested in DeepMSPeptide are comparing it to the libraries listed below

• ZhuMetLab / MetDNA2
  Knowledge-guided multilayer network approach is executed in MetDNA2
  ☆14Updated 2 years ago
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆13Updated last year
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆9Updated 3 years ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated last week
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆19Updated 7 months ago
• pattilab / DecoID
  Metabolomics software for database-assisted deconvolution of MS/MS spectra
  ☆18Updated last year
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆27Updated 6 months ago
• alexandrovteam / curatr
  ☆14Updated 2 years ago
• RogerGinBer / RHermes
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆25Updated last year
• ZhuMSLab / DecoMetDIA
  ☆11Updated 2 years ago
• dphansti / CORAL
  ☆28Updated 2 years ago
• eMetaboHUB / MS-CleanR
  ☆25Updated last year
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• PHOENIXcenter / deeprtalign
  a deep learning-based retention time alignment tool for large cohort LC-MS data analysis
  ☆11Updated last year
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆23Updated 2 months ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆39Updated 8 months ago
• WMBEdmands / compMS2Miner
  metabolite identification R-package for metabolomic high-resolution LC-MS datasets.
  ☆14Updated 7 years ago
• computational-metabolomics / msPurity
  R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
  ☆15Updated 8 months ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆22Updated last year
• jessegmeyerlab / proteomics-tutorial
  ☆56Updated 8 months ago
• zamboni-lab / SLAW
  Scalable and self-optimizing processing workflow for untargeted LC-MS
  ☆28Updated 5 months ago
• ipb-halle / MetFragR
  R package for MetFrag
  ☆24Updated 7 years ago
• rformassspectrometry / MsCoreUtils
  Core Utils for Mass Spectrometry Data
  ☆16Updated 3 months ago
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆25Updated 10 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆34Updated last week
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆18Updated last week
• HuanLab / ISFrag
  A bioinformatic tool facilitating automated in-source fragmentation identification
  ☆10Updated 2 years ago
• jaspershen / MetNormalizer
  MetNormalizer is used to normalize large scale metabolomics data.
  ☆20Updated 3 years ago
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆16Updated this week