Alternatives and similar repositories for OmicsIntegrator:

Users that are interested in OmicsIntegrator are comparing it to the libraries listed below

• pachterlab / sircel
  Identify cell barcodes from single-cell genomics sequencing experiments
  ☆43Updated 3 years ago
• mikessh / migec
  A RepSeq processing swiss-knife
  ☆41Updated last year
• nfusi / qvalue
  Converts p-values in q-values, see (Storey and Tibshirani, 2003)
  ☆29Updated 7 years ago
• cgat-developers / cgat-core
  Core functionality of the CGAT code
  ☆33Updated 3 months ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 5 years ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 6 years ago
• hart-lab / bagel
  BAGEL software
  ☆27Updated last year
• rhondabacher / SCnorm
  Normalization for single cell RNA-seq data
  ☆47Updated last year
• Teichlab / GPfates
  ☆19Updated 7 years ago
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 7 years ago
• jtleek / svaseq
  Analysis for svaseq paper
  ☆19Updated 10 years ago
• govinda-kamath / clustering_on_transcript_compatibility_counts
  Clustering cells from single cell RNA seq assays
  ☆46Updated 6 years ago
• hemberg-lab / D3E
  Discrete Distributional Differential Expression
  ☆22Updated 6 years ago
• slowkow / allelefrequencies
  📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.
  ☆20Updated last year
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆47Updated 2 weeks ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆57Updated 4 years ago
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆28Updated 2 years ago
• YosefLab / scone
  ☆53Updated 2 months ago
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 6 years ago
• shendurelab / MPRAflow
  A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
  ☆32Updated 4 months ago
• hartleys / JunctionSeq
  The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…
  ☆28Updated 7 years ago
• mozack / vdjer
  V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
  ☆29Updated 2 years ago
• rargelaguet / thesis
  University of Cambridge PhD thesis
  ☆15Updated 4 years ago
• andrewrech / antigen.garnish
  ☆47Updated 2 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆42Updated 8 months ago
• GSEA-MSigDB / gsea-desktop
  Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…
  ☆36Updated last month
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆58Updated last week
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆35Updated 5 years ago