fraenkel-lab / OmicsIntegratorLinks
This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.
☆31Updated 6 years ago
Alternatives and similar repositories for OmicsIntegrator
Users that are interested in OmicsIntegrator are comparing it to the libraries listed below
Sorting:
- IPAW: a Nextflow workflow for proteogenomics☆28Updated last year
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆58Updated 4 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆30Updated 6 years ago
- Bioinformatics for Benched Biologists☆22Updated 5 years ago
- ☆12Updated 4 years ago
- Core functionality of the CGAT code☆33Updated 3 weeks ago
- ☆84Updated 4 years ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Python biomart API☆68Updated 2 years ago
- R package for analysing proteomics data☆49Updated 2 years ago
- A RepSeq processing swiss-knife☆41Updated last year
- Integration ribosome profiling - mass spectrometry☆15Updated 3 weeks ago
- 📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.☆21Updated last year
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated this week
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Updated 5 years ago
- Decombinator v5: fast, error-correcting analysis of TCR repertoires☆27Updated last week
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 5 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- OLD REPOSITORY - Go to☆31Updated 7 years ago
- ☆42Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- 3D hotspot mutation proximity analysis tool☆48Updated 2 years ago