fraenkel-lab / OmicsIntegratorLinks
This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.
☆31Updated 6 years ago
Alternatives and similar repositories for OmicsIntegrator
Users that are interested in OmicsIntegrator are comparing it to the libraries listed below
Sorting:
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆59Updated this week
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Python biomart API☆66Updated 2 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆76Updated 3 weeks ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- ☆38Updated last year
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 7 months ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- BAGEL software☆28Updated last year
- IPAW: a Nextflow workflow for proteogenomics☆28Updated 11 months ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- 📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.☆20Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 2 months ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 8 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆30Updated 6 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- ☆84Updated 4 years ago
- A RepSeq processing swiss-knife☆41Updated last year
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆43Updated this week
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆51Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- R package for analysing proteomics data☆49Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 5 months ago
- University of Cambridge PhD thesis☆15Updated 4 years ago