Gillespie Stochastic Simulation Algorithm
☆14Jun 29, 2013Updated 13 years ago
Alternatives and similar repositories for Gillespie
Users that are interested in Gillespie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 6 months ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- Supplementary Material to accompany the paper, DJ Warne, SA Sisson, C Drovandi (2019) Acceleration of expensive computations in Bayesian…☆13Oct 23, 2020Updated 5 years ago
- Lightweight workflows in bioinformatics:☆24Nov 5, 2014Updated 11 years ago
- PePPer - Personalized Perturbation Profiler☆11Oct 4, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- Understand the Gillespie algorithm and build it yourself in Python☆24Feb 23, 2018Updated 8 years ago
- Materials for GCB535 at Penn.☆21Apr 19, 2019Updated 7 years ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 8 years ago
- A python implementation of the spectral projected gradient (SPG) optimization method☆12Mar 24, 2014Updated 12 years ago
- Objects, Invariants and Properties for Graph Theory (GT) automated conjecturing: in particular with the Sage program CONJECTURING: http:/…☆18May 24, 2023Updated 3 years ago
- ☆14Jan 24, 2024Updated 2 years ago
- Stochastic Gillespie-type simulations using Julia☆67Feb 24, 2026Updated 4 months ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A "No-DOM" GUI Runtime: SolidJS Logic driving Rust GPUI Rendering.☆69Jan 24, 2026Updated 5 months ago
- Sample code from Allen & Tildesley's Computer Simulation of Liquids, 1st Ed. See https://github.com/Allen-Tildesley/examples for moderni…☆18Sep 10, 2017Updated 8 years ago
- GLASS consortium☆14May 31, 2022Updated 4 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆18Feb 8, 2019Updated 7 years ago
- ☆12May 30, 2023Updated 3 years ago
- ☆11Feb 18, 2021Updated 5 years ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- ☆12Aug 23, 2018Updated 7 years ago
- Prepare topology and coordinate file for CG models in Genesis.☆13May 14, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code used for the single-cell RNA-Seq batch effects paper☆12Sep 25, 2017Updated 8 years ago
- Visual Molecular Dynamics in Docker Container☆12Jan 1, 2015Updated 11 years ago
- DeepCC: a novel deep learning-based framework for cancer molecular subtype classification☆21Dec 1, 2021Updated 4 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated 2 years ago
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆26Mar 11, 2019Updated 7 years ago
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- CryoBoltz code for protein structure prediction with cryo-EM guidance. NeurIPS 2025.☆38Nov 30, 2025Updated 7 months ago
- Software package for spin dynamics☆14Jul 3, 2026Updated last week
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆16May 11, 2026Updated 2 months ago
- Continuous Wavelet Transform Library for Python☆16Mar 16, 2014Updated 12 years ago
- COSMO: COarse-grained Simulation of intrinsically disordered prOteins with openMM☆15Updated this week
- FOrtran RiEmann SolveErs EnviRonment☆12Mar 26, 2020Updated 6 years ago
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 3 years ago
- ☆14Jan 16, 2019Updated 7 years ago
- GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the …☆12Apr 7, 2023Updated 3 years ago