Alternatives and similar repositories for Gillespie:

Users that are interested in Gillespie are comparing it to the libraries listed below

• csb-toolbox / CSB
  A Python framework for structural bioinformatics.
  ☆13Updated last year
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last year
• SBRG / MASSpy
  ☆23Updated 2 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated 2 weeks ago
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆32Updated 4 years ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆26Updated 7 years ago
• mikessh / migmap
  HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
  ☆52Updated 5 months ago
• carlobaldassi / GaussDCA.jl
  Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module
  ☆22Updated 3 years ago
• AviranLab / patteRNA
  Rapid mining of RNA structure motifs from profiling data.
  ☆13Updated 3 years ago
• hawkjo / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆27Updated 2 months ago
• ISMB-ECCB-2019-Tutorial-AM4 / reproducible-computational-workflows
  A Practical Introduction to Reproducible Computational Workflows (ISMB/ECCB 2019 Tutorial AM4)
  ☆33Updated 5 years ago
• SBRG / pymodulon
  Python package for analyzing and visualizing iModulons
  ☆13Updated 2 weeks ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆20Updated 7 months ago
• vpejaver / mutpred2
  Source code for MutPred2.0
  ☆13Updated 3 weeks ago
• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆26Updated 4 months ago
• OrensteinLab / DeCoDe
  Degenerate Codon Design
  ☆13Updated 5 years ago
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 2 years ago
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆16Updated 9 years ago
• junioreif / OpenMiChroM
  ☆13Updated 3 weeks ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆65Updated 4 months ago
• MannLabs / structuremap_analysis
  Analysis workflow for investigating the structural context of PTMs
  ☆11Updated last year
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆32Updated last year
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆30Updated 3 years ago
• knutdrand / bionumpy
  ☆9Updated 10 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• open2c / polychrom
  Chromosome polymer simulations and in silico capture experiments
  ☆48Updated last year
• ebi-jdispatcher / webservice-clients
  A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs
  ☆52Updated 8 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago