omerwe / MKLMM
Multi Kernel Linear Mixed Models for Complex Phenotype Prediction
☆8Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for MKLMM
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆45Updated 4 years ago
- Bayesian Multitask Multiple Kernel Learning☆18Updated 6 years ago
- Code for performing PCA followed by CCA☆18Updated 5 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆12Updated 6 years ago
- ☆21Updated 5 years ago
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion☆18Updated 3 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 5 years ago
- Implementations in both Matlab and R of the CIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/s…☆17Updated last year
- Online Principal Component Analysis☆22Updated 2 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆25Updated 7 months ago
- Source code for integrative nonnegative matrix factorization☆16Updated 6 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Updated 3 years ago
- This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.☆24Updated 2 years ago
- Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing☆11Updated 4 years ago
- ☆24Updated 3 years ago
- topological data analysis of population-scale microbiomes☆32Updated last year
- Can deep learning improve genomic prediction of complex human traits? by Pau Bellot, Gustavo de los Campos, Miguel Pérez-Enciso, Genetics☆22Updated 3 months ago
- Graph Neural Network model for survival analysis from multi-omics data☆11Updated 2 years ago
- Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction☆15Updated 3 years ago
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Updated 8 years ago
- Simulating the expected output from a GWAS with a given causal model.☆10Updated 3 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated 8 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆58Updated 3 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 5 years ago
- ☆14Updated 6 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 3 years ago