Alternatives and similar repositories for DL-Biobank:

Users that are interested in DL-Biobank are comparing it to the libraries listed below

• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆23Updated 3 months ago
• ShujiaHuang / qmplot
  A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
  ☆42Updated last year
• cancer-genomics / delfi_scripts
  ☆72Updated 3 years ago
• griffithlab / DeepSVR
  ☆50Updated 5 years ago
• Jeltje / varscan2
  Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2
  ☆29Updated 6 years ago
• ding-lab / PanCanAtlasGermline
  ☆43Updated 6 years ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• limix / limix
  Linear mixed model for genomic analyses.
  ☆104Updated 3 years ago
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆40Updated 2 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆50Updated last month
• CCBR / Pipeliner
  An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
  ☆4Updated last year
• taylor-lab / hotspots
  Identifying recurrent mutations in cancer
  ☆37Updated 4 years ago
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆46Updated 5 years ago
• rschwess / tutorial_dl_for_genomics
  A short tutorial to using DL and keras for genomics with sequence data.
  ☆15Updated 4 years ago
• monogenea / GWAStutorial
  Genome-wide association studies tutorial 🧬
  ☆48Updated 5 years ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆51Updated last year
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆33Updated 2 years ago
• NVIDIA / VariantWorks
  Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/
  ☆45Updated 2 years ago
• tomh1lll / dudeml
  detection of duplications and deletions using Python based machine learning techniques
  ☆28Updated 5 years ago
• mkanai / fujiplot
  Fuji plot—a circos representation of multiple GWAS results—
  ☆83Updated last year
• mdozmorov / gwas2bed
  Extracting disease-specific genomic coordinates from GWAS catalog
  ☆20Updated 5 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆78Updated 4 months ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆47Updated 2 weeks ago
• iscb-dc-rsg / 2016-summer-workshop
  ISCB DC Area Regional Student Group - Summer 2016 Workshop
  ☆48Updated 8 years ago
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆35Updated 3 years ago
• shenlab-sinai / diffreps
  Differential analysis for ChIP-seq with biological replicates
  ☆35Updated 3 years ago
• ZhiGroup / RaPID
  ☆31Updated 3 years ago
• ben-laufer / DMRichR
  A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…
  ☆42Updated last year
• UMCUGenetics / RNASeq
  RNASeq pipeline
  ☆36Updated 5 years ago
• heathsc / gemBS
  gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…
  ☆33Updated 3 years ago