Alternatives and similar repositories for DL-Biobank

Users that are interested in DL-Biobank are comparing it to the libraries listed below

• griffithlab / DeepSVR
  ☆51Updated 6 years ago
• cancer-genomics / delfi_scripts
  ☆74Updated 4 years ago
• rschwess / tutorial_dl_for_genomics
  A short tutorial to using DL and keras for genomics with sequence data.
  ☆15Updated 4 years ago
• CshlSiepelLab / LINSIGHT
  ☆27Updated 5 months ago
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆41Updated 3 years ago
• Jeltje / varscan2
  Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2
  ☆29Updated 7 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆87Updated 2 weeks ago
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆50Updated 6 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆54Updated 3 weeks ago
• ncomms-20-10056-t / ncomms-20-10056-t
  ☆22Updated 5 years ago
• CaiLiLab / MuRaL
  MuRaL is a deep learning framework for building base-resolution mutation rate maps.
  ☆21Updated this week
• cancer-genomics / reproduce_lucas_wflow
  ☆31Updated last year
• gagneurlab / absplice
  ☆39Updated 4 months ago
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆29Updated last month
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆37Updated 4 years ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• ShujiaHuang / qmplot
  A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
  ☆47Updated last year
• FusionAnnotator / FusionAnnotator
  FusionAnnotator source code
  ☆15Updated 2 years ago
• ben-laufer / DMRichR
  A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…
  ☆47Updated 2 years ago
• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆23Updated 10 months ago
• bioinfo-pf-curie / TMB
  Tumor Mutational Burden
  ☆63Updated 3 months ago
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆33Updated 3 years ago
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆32Updated 3 years ago
• christacaggiano / celfie
  cfDNA cell type of origin estimation
  ☆32Updated 2 years ago
• nloyfer / meth_atlas
  ☆51Updated 3 years ago
• cancerit / cgpBattenberg
  Battenberg algorithm and associated implementation script
  ☆53Updated 5 years ago
• dmnfarrell / smallrnaseq
  small rna-seq analysis package
  ☆30Updated 3 years ago
• WGLab / VirTect
  Detection of viruses from RNA-Seq on human samples
  ☆46Updated 2 years ago
• adoebley / Griffin
  A flexible framework for nucleosome profiling of cell-free DNA
  ☆27Updated 2 years ago
• kundajelab / genomedisco
  Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
  ☆26Updated 7 years ago