andreasottoriva / neutral-tumor-evolutionLinks
Stochastic simulation of next-generation sequencing data from neutrally evolving tumors
☆10Updated 8 years ago
Alternatives and similar repositories for neutral-tumor-evolution
Users that are interested in neutral-tumor-evolution are comparing it to the libraries listed below
Sorting:
- Methods for inferring undirected networks from data☆45Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆56Updated 3 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated this week
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 4 years ago
- ☆29Updated 2 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Population balance analysis☆44Updated 6 years ago
- A software package for analyzing snapshots of developmental processes☆146Updated 3 years ago
- pCMF R package☆14Updated 6 years ago
- Discrete Distributional Differential Expression☆22Updated 6 years ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆110Updated 5 years ago
- ☆85Updated 5 years ago
- ☆26Updated last year
- This contains the dataset for comparing scRNA-seq analysis methods☆91Updated 5 years ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆36Updated 4 years ago
- Accurate and robust imputation of scRNA-seq data☆97Updated 6 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆48Updated 6 years ago
- Lightweight and Fast; RNA-seq quantification at the event-level☆114Updated 4 months ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆45Updated 5 years ago
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19Updated 6 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆12Updated 4 months ago
- ☆30Updated 2 weeks ago
- ☆102Updated 2 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- Simulating single-cell data using gene regulatory networks 📠☆75Updated last year