andreasottoriva / neutral-tumor-evolutionLinks
Stochastic simulation of next-generation sequencing data from neutrally evolving tumors
☆10Updated 8 years ago
Alternatives and similar repositories for neutral-tumor-evolution
Users that are interested in neutral-tumor-evolution are comparing it to the libraries listed below
Sorting:
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 3 weeks ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- Methods for inferring undirected networks from data☆45Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆56Updated 2 years ago
- Single-cell Hierarchical Poisson Factorization☆72Updated 3 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 4 years ago
- A software package for analyzing snapshots of developmental processes☆146Updated 2 years ago
- Spatial Simulation of Tumor Growth☆14Updated 8 years ago
- Population balance analysis☆44Updated 6 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆92Updated 6 years ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆34Updated 4 years ago
- ☆16Updated last year
- Zero-inflated dimensionality reduction algorithm for single-cell data☆110Updated 5 years ago
- Accurate and robust imputation of scRNA-seq data☆96Updated 5 years ago
- Tutorials on using latest dynamo package☆24Updated 2 weeks ago
- This contains the dataset for comparing scRNA-seq analysis methods☆91Updated 4 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 5 years ago
- ☆29Updated 2 years ago
- ☆92Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- ☆85Updated 5 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆45Updated 5 years ago
- ☆100Updated 2 years ago
- Lightweight and Fast; RNA-seq quantification at the event-level☆113Updated 3 months ago
- ☆26Updated 10 months ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆127Updated 4 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year