samabs / conligaLinks
Probabilistic inference of somatic copy number alterations using repeat DNA (FAST-SeqS)
☆9Updated 6 years ago
Alternatives and similar repositories for conliga
Users that are interested in conliga are comparing it to the libraries listed below
Sorting:
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 5 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Updated last week
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- Polygenic score calculation from VCF in Nim.☆15Updated 4 years ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 7 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated 10 months ago
- C++ library for parsing several formats in bioinformatics☆9Updated 2 years ago
- ☆10Updated 4 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 7 months ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Updated 4 years ago
- ☆25Updated 4 years ago
- ☆14Updated 9 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- Rust in bioinformatics and computational biology☆20Updated 2 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- ☆13Updated last year
- GBWT-based handle graph☆31Updated 3 months ago
- ☆18Updated 3 years ago
- ☆13Updated last week
- This program can be used to parse the NCBI GenBank file to create a tabulated csv file.☆10Updated 6 years ago
- Toolkit for manipulating FASTA and SAM files☆18Updated last year