lamm-mit / ProteinDiffusionGenerator
Generative method to design novel proteins using a diffusion model
☆44Updated 2 years ago
Alternatives and similar repositories for ProteinDiffusionGenerator:
Users that are interested in ProteinDiffusionGenerator are comparing it to the libraries listed below
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆66Updated 4 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆37Updated 9 months ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆25Updated last year
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆63Updated 4 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆57Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆88Updated 7 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆56Updated 10 months ago
- ☆47Updated 9 months ago
- ☆62Updated 3 months ago
- A benchmark for 3D biomolecular structure prediction models☆55Updated 3 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆50Updated last month
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆32Updated 10 months ago
- ☆73Updated last week
- ☆54Updated 11 months ago
- Efficient manipulation of protein structures in Python☆51Updated 4 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated 2 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆42Updated 3 months ago
- Efficient implementatin of ESM family.☆53Updated last month
- Open source code for AlphaFold.☆39Updated 2 years ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆47Updated 7 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆72Updated 8 months ago
- ☆43Updated 6 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆36Updated 3 months ago
- dMaSIF implementation for google colab☆31Updated last year
- ☆27Updated last year
- Learning Binding Affinities via Fine-tuning of Protein and Ligand Language Models☆22Updated 3 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆50Updated last month
- Code for humanization of antibody and nanobody☆36Updated 3 months ago