Alternatives and similar repositories for Analysing-10X-ScRNA-data-Wang-et-al-2020-Nat-Commun-

Users that are interested in Analysing-10X-ScRNA-data-Wang-et-al-2020-Nat-Commun- are comparing it to the libraries listed below

• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆235Updated 2 years ago
• IanevskiAleksandr / sc-type
  ☆280Updated last year
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆450Updated last year
• sunduanchen / Scissor
  Scissor package
  ☆245Updated last year
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆233Updated 9 months ago
• navinlabcode / copykat
  ☆259Updated 2 months ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆226Updated last year
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆315Updated 5 years ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆229Updated last month
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆302Updated 3 years ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆302Updated last week
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆296Updated 2 years ago
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆266Updated 3 weeks ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆140Updated 4 years ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆169Updated 3 years ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆132Updated last year
• huayc09 / SeuratExtend
  ☆196Updated 3 weeks ago
• aertslab / scenicplus
  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…
  ☆240Updated 11 months ago
• crazyhottommy / TCR-BCR-seq-analysis
  T/B cell receptor sequencing analysis notes
  ☆270Updated last year
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆226Updated last year
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆199Updated last month
• neurorestore / Libra
  ☆180Updated 7 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆178Updated 4 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆150Updated 3 years ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆356Updated 2 weeks ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆159Updated 3 years ago
• mdozmorov / scATAC-seq_notes
  scATAC-seq data analysis tools and papers
  ☆126Updated 5 months ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆206Updated 2 months ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆303Updated 2 months ago