nufeb / NUFEBLinks
Official release of the NUFEB software
☆21Updated 2 years ago
Alternatives and similar repositories for NUFEB
Users that are interested in NUFEB are comparing it to the libraries listed below
Sorting:
- Python interface for running COMETS simulations and analyzing the results☆12Updated 4 months ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 4 months ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆28Updated 6 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- Webinars&Tutorial on Containers on HPC and Cloud with Singularity☆27Updated 3 years ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆15Updated 2 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆15Updated last month
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 3 months ago
- A tutorial on how to set up a Linux environment on a computer running Windows 10. Followed by how to install and use (bio)conda.☆44Updated last year
- Individual-based Dynamics of Microbial Communities Simulator☆18Updated 2 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆61Updated last month
- Release of the whole cell E. coli model.☆66Updated 6 months ago
- GPU-accelerated multicellular modelling framework☆63Updated 2 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆55Updated 4 months ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆63Updated 4 months ago
- Python package to study microbial communities using metabolic modeling.☆103Updated 2 weeks ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆74Updated last month
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- Nanopore Plasmid Sequencing☆32Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- The BiGG Models website server☆83Updated 5 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆82Updated 7 months ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆24Updated 2 years ago
- ☆24Updated 2 years ago
- CompuCell3D public source code repository☆68Updated this week
- Python package for building and analyzing models using ModelSEED☆23Updated 2 months ago