PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and visualize results. To contribute, fork and make PRs to the development branch.
☆40May 24, 2026Updated 2 weeks ago
Alternatives and similar repositories for PhysiCell-Studio
Users that are interested in PhysiCell-Studio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…☆205Feb 11, 2026Updated 3 months ago
- A web tool for exploring large maps of molecular interactions☆11Updated this week
- Sample models for the PhysiCell grammar / rules paper☆34Jul 21, 2025Updated 10 months ago
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Dec 2, 2025Updated 6 months ago
- ☆16Dec 8, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 2 months ago
- A collection of 280+ Boolean networks from various sources useful for benchmarking or testing.☆22May 29, 2026Updated last week
- Interactive Performance, Analysis and Visualization of RAVE Latent Spaces via PCA and OSC Integration☆19Jul 15, 2025Updated 10 months ago
- Tired of check-in/out with Woffu? I'll do it for you :)☆10Sep 9, 2019Updated 6 years ago
- A Python Library to interact with the Cell Collective API v2☆12Dec 8, 2022Updated 3 years ago
- Representation of Module Activity☆10May 31, 2017Updated 9 years ago
- Static analyzer for dynamics of Automata Networks☆12Feb 3, 2021Updated 5 years ago
- SINDy-SA framework: enhancing nonlinear system identification with sensitivity analysis☆12Apr 24, 2025Updated last year
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆10Mar 14, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This is the fully public version of QSP Toolbox. Please check the README file for the current version of MATLAB that is supported.☆25Dec 29, 2025Updated 5 months ago
- Computational framework for dataset integration☆11Jul 21, 2023Updated 2 years ago
- Simple distributed data manipulation and processing routines in Julia☆16Mar 22, 2022Updated 4 years ago
- ☆17Oct 25, 2018Updated 7 years ago
- ☆12Nov 17, 2021Updated 4 years ago
- ☆31Jun 12, 2025Updated 11 months ago
- Code and data for article "Learning nonlocal constitutive models with neural networks", CMAME☆12Sep 7, 2021Updated 4 years ago
- Quantum Gene Regulatory Networks with Application to Single-cell Data☆25Feb 28, 2025Updated last year
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆27Dec 3, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python implementation of the ElPiGraph algorithm with cpu and gpu support☆22Mar 26, 2026Updated 2 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jun 6, 2025Updated last year
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated this week
- ☆16Dec 18, 2023Updated 2 years ago
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated last year
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Neural Network (NN) based anisotropic material model with an Abaqus UMAT implementation☆24Jul 3, 2022Updated 3 years ago
- ☆17Nov 15, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆22May 19, 2018Updated 8 years ago
- Implementation of a new hybrid machine learning technique for multi-fidelity surrogates of finite elements models with applications in mu…☆20Jan 21, 2024Updated 2 years ago
- Platform for Interactive analysis and Visualization Of Transcriptomics data☆26Jun 9, 2020Updated 6 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated last month
- An implementation of a UMAT on ABAQUS for aging viscoelastic materials☆22Aug 23, 2020Updated 5 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 6 months ago
- ☆65Mar 18, 2025Updated last year