Alternatives and similar repositories for PhysiCell-Studio

Users that are interested in PhysiCell-Studio are comparing it to the libraries listed below

• MathCancer / PhysiCell
  PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…
  ☆164Updated 5 months ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆26Updated this week
• physicell-training / ws2022
  2022 PhysiCell Hackathon and Workshop
  ☆12Updated 2 years ago
• tissue-forge / tissue-forge
  Interactive, particle-based physics, chemistry and biology modeling and simulation environment
  ☆23Updated last week
• sysbio-curie / Neko
  ☆13Updated 3 weeks ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆44Updated last week
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 5 months ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆42Updated 3 months ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆59Updated last week
• gitter-lab / ml4bio
  A graphical interface for sklearn classification to introduce machine learning to biologists
  ☆12Updated 3 months ago
• czi-ai / transcriptformer
  ☆52Updated last week
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆52Updated last week
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆23Updated last year
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆62Updated this week
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆54Updated last year
• PMBio / spatialdata-workshops
  ☆12Updated 2 months ago
• scverse / scvi-tutorials
  Notebooks used in scvi-tools tutorials
  ☆54Updated last week
• yuqiyuqitan / SPACEc
  ☆44Updated 2 weeks ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated last year
• theislab / prophet
  ☆34Updated 2 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆53Updated last week
• shuxiaoc / maxfuse
  ☆53Updated last year
• snap-stanford / SATURN
  ☆130Updated last year
• stefanpeidli / mousipy
  Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.
  ☆24Updated 3 weeks ago
• VirtualEmbryo / foambryo
  Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues
  ☆12Updated 3 weeks ago
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆14Updated this week
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆72Updated last month
• scverse / spatialdata-notebooks
  ☆54Updated last week
• SlavovLab / SCP_recommendations
  Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …
  ☆12Updated 2 years ago
• andreariba / DeepCycle
  Cell cycle inference in single-cell RNA-seq
  ☆46Updated 2 years ago