Alternatives and similar repositories for PhysiCell-Studio

Users that are interested in PhysiCell-Studio are comparing it to the libraries listed below

• MathCancer / PhysiCell
  PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…
  ☆165Updated 5 months ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆26Updated this week
• VirtualEmbryo / foambryo
  Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues
  ☆12Updated last month
• gitter-lab / ml4bio
  A graphical interface for sklearn classification to introduce machine learning to biologists
  ☆12Updated 3 months ago
• czi-ai / transcriptformer
  ☆53Updated last week
• tissue-forge / tissue-forge
  Interactive, particle-based physics, chemistry and biology modeling and simulation environment
  ☆23Updated this week
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆54Updated last year
• saucermanlab / Netflux
  Netflux is a user-friendly software for developing dynamic computational models of biological networks. Models are created in Excel forma…
  ☆27Updated 6 months ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆42Updated last week
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆182Updated 4 months ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆119Updated last week
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆23Updated last year
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆69Updated 7 months ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆44Updated 2 weeks ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆284Updated last month
• SBRG / MASSpy
  ☆24Updated 2 years ago
• mattaq31 / GelGenie
  Open-Source package for segmentation and analysis of gel electrophoresis images using machine learning. Both a python framework for trai…
  ☆66Updated this week
• netZoo / netZooPy
  netZooPy is a network biology package implemented in Python.
  ☆86Updated 3 weeks ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆54Updated last week
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆145Updated this week
• open2c / polychrom
  Chromosome polymer simulations and in silico capture experiments
  ☆51Updated 3 months ago
• ingewortel / celltrackR
  An R package for the analysis and interpretation of cell migration tracks.
  ☆13Updated 10 months ago
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆131Updated 11 months ago
• zj-zhang / AMBER
  Automated Modelling for Biological Evidence-based Research
  ☆45Updated last year
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆42Updated 3 weeks ago
• msmdev / pyGPCCA
  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…
  ☆21Updated 3 months ago
• cellmodeller / CellModeller
  GPU-accelerated multicellular modelling framework
  ☆63Updated 2 months ago
• lakigigar / bioRxiv-diff
  ☆12Updated 10 months ago