PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and visualize results. To contribute, fork and make PRs to the development branch.
☆40Oct 9, 2026Updated this week
Alternatives and similar repositories for PhysiCell-Studio
Users that are interested in PhysiCell-Studio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆36Oct 7, 2026Updated last week
- PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…☆217Oct 2, 2026Updated last week
- A repository that stores all the MCP servers for creating biological mechanistic models. It includes server for NeKo, MaBoSS, PhysiCell/P…☆19Oct 1, 2026Updated last week
- Sample models for the PhysiCell grammar / rules paper☆34Jul 21, 2025Updated last year
- ☆16Dec 8, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 6 months ago
- Interactive, particle-based physics, chemistry and biology modeling and simulation environment☆28Jul 14, 2025Updated last year
- A Python Library to interact with the Cell Collective API v2☆12Dec 8, 2022Updated 3 years ago
- Multiscale simulation of multi-cellular system☆11Oct 8, 2026Updated last week
- SyncToy, but brought up-to-date with a Fluent design and a nod to the past.☆12May 14, 2024Updated 2 years ago
- Static analyzer for dynamics of Automata Networks☆13Feb 3, 2021Updated 5 years ago
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆10Mar 14, 2026Updated 7 months ago
- ☆12Aug 6, 2024Updated 2 years ago
- ☆13Nov 17, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- "Independent Component Analysis of BIg Omics Data"☆15Nov 3, 2022Updated 3 years ago
- ☆14Feb 24, 2020Updated 6 years ago
- Simple distributed data manipulation and processing routines in Julia☆16Mar 22, 2022Updated 4 years ago
- ☆17Oct 25, 2018Updated 7 years ago
- ABAQUS users material models wrapper for Julia☆13Apr 30, 2020Updated 6 years ago
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆17Mar 24, 2026Updated 6 months ago
- Abaqus UMAT and sample input files for modeling of open-cell elastomeric foams☆12Feb 25, 2022Updated 4 years ago
- Code and data for article "Learning nonlocal constitutive models with neural networks", CMAME☆12Sep 7, 2021Updated 5 years ago
- Python implementation of the ElPiGraph algorithm with cpu and gpu support☆22Mar 26, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆23Updated this week
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Oct 7, 2026Updated last week
- A python framework for creating image-guided cancer patient digital twins.☆27Apr 7, 2026Updated 6 months ago
- UMAT script for Abaqus, polycrystalline shape memory alloy model☆14Nov 28, 2018Updated 7 years ago
- Multiscale modeling of inelastic materials with Thermodynamics-based Artificial Neural Networks (TANN)☆15Jul 29, 2026Updated 2 months ago
- Adapting protein language models for structure-conditioned design☆43Aug 5, 2024Updated 2 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 6 years ago
- Optimal calibration of continuum cyclic constitutive model using Particle Swarm Optimization☆18Mar 8, 2018Updated 8 years ago
- ☆22May 19, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Muon for Julia☆30Oct 7, 2026Updated last week
- ABAQUS Subroutine for the Implementation of Thermomechanical Constitutive Model for Shape Memory Alloys☆32Dec 17, 2019Updated 6 years ago
- ADMM ⊇ Projective Dynamics: Fast Simulation of General Constitutive Models☆22Jan 23, 2019Updated 7 years ago
- This paper presents AVATREE, a computational modelling framework that generates Anatomically Valid Airway tree conformations and provides…☆20Apr 6, 2020Updated 6 years ago
- Quantum Gene Regulatory Networks with Application to Single-cell Data☆27Sep 9, 2026Updated last month
- This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.☆21Oct 1, 2026Updated last week