PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
☆208Feb 11, 2026Updated 4 months ago
Alternatives and similar repositories for PhysiCell
Users that are interested in PhysiCell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and vis…☆40Jun 22, 2026Updated last week
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆35Updated this week
- Multiscale simulation of multi-cellular system☆11Jun 27, 2026Updated last week
- Multiscale simulation of multi-cellular system☆30Jul 31, 2020Updated 5 years ago
- Interactive, particle-based physics, chemistry and biology modeling and simulation environment☆27Jul 14, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Dec 2, 2025Updated 7 months ago
- Chaste - Cancer Heart And Soft Tissue Environment - main public repository.☆148Updated this week
- Cells as active droplets☆11Feb 2, 2022Updated 4 years ago
- Martini Workshop: Simulating a Minimal Bacterial Cell☆16May 13, 2024Updated 2 years ago
- GPU-accelerated multicellular modelling framework☆73Apr 21, 2025Updated last year
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 3 months ago
- libRoadRunner: A high-performance SBML simulator☆62Jun 9, 2026Updated 3 weeks ago
- ☆16Dec 8, 2022Updated 3 years ago
- Representation of Module Activity☆10May 31, 2017Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Static analyzer for dynamics of Automata Networks☆12Feb 3, 2021Updated 5 years ago
- This is an older version of cytosim, a cytoskeleton simulation engine☆29Nov 2, 2021Updated 4 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆19May 24, 2024Updated 2 years ago
- A collection of 280+ Boolean networks from various sources useful for benchmarking or testing.☆24May 29, 2026Updated last month
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆26Jul 15, 2024Updated last year
- Release of the whole cell E. coli model.☆77Dec 10, 2024Updated last year
- CompuCell3D public source code repository☆83Jun 27, 2026Updated last week
- A CUDA project for Molecular Dynamics, Brownian Dynamics, Hydrodynamics... intended to simulate a very generic system constructing a simu…☆66Apr 30, 2026Updated 2 months ago
- Spatial Simulation of Tumor Growth☆14Feb 24, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.☆21May 22, 2026Updated last month
- GPU Accelerated 3D Cell Simulator☆13Jun 25, 2026Updated last week
- Whole Cell Model of E. coli☆41Updated this week
- This is the fully public version of QSP Toolbox. Please check the README file for the current version of MATLAB that is supported.☆25Dec 29, 2025Updated 6 months ago
- 3D computational model for lipid membranes☆28Feb 17, 2025Updated last year
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆39Aug 19, 2024Updated last year
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆129Jun 25, 2026Updated last week
- Spatial computation☆21Oct 13, 2021Updated 4 years ago
- pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo. For an…☆13May 3, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python library for attractor identification and control in Boolean networks☆31Sep 23, 2025Updated 9 months ago
- A web tool for exploring large maps of molecular interactions☆11Updated this week
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆10Mar 14, 2026Updated 3 months ago
- Julia library for working with sinograms / tomography / Radon transform☆17Jun 23, 2026Updated last week
- COMET Single-Cell Marker Detection tool☆34Jun 21, 2022Updated 4 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆30Nov 7, 2024Updated last year
- Virtual Cell Framework☆130Jun 25, 2026Updated last week