Alternatives and similar repositories for Nano-tRNAseq

Users that are interested in Nano-tRNAseq are comparing it to the libraries listed below

• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆25Updated 2 weeks ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆33Updated 2 years ago
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆37Updated 5 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆42Updated 4 months ago
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆25Updated 2 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆60Updated 7 months ago
• nf-core / isoseq
  Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …
  ☆40Updated 2 weeks ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆65Updated last month
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆50Updated 4 years ago
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆35Updated 10 months ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆43Updated last week
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• vpc-ccg / freddie
  Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
  ☆17Updated 2 years ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆39Updated 9 months ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆49Updated 5 months ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆53Updated 7 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• gao-lab / CPC2_standalone
  Official repo for the standalone package of Coding Potential Calculator (CPC) 2.
  ☆24Updated 3 years ago
• LabShengLi / nanome
  NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)
  ☆30Updated last year
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆25Updated 5 months ago
• timplab / nanopore-methylation-utilities
  ☆29Updated 4 years ago
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆34Updated 7 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• gexijin / shinygo
  ☆27Updated 2 weeks ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆44Updated 9 months ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated last month
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆34Updated 2 months ago
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆20Updated last week
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago