novoalab / Nano-tRNAseqLinks
Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)
☆16Updated last year
Alternatives and similar repositories for Nano-tRNAseq
Users that are interested in Nano-tRNAseq are comparing it to the libraries listed below
Sorting:
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆116Updated 2 weeks ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Updated 2 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆91Updated 4 months ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 months ago
- Official repo for the standalone package of Coding Potential Calculator (CPC) 2.☆28Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Fast and flexible ORF finder☆76Updated 3 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 3 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last week
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆50Updated 3 weeks ago
- ☆35Updated 2 years ago
- reference-free transcriptome assembly for short and long reads☆107Updated last year
- web documentation for Trinotate☆48Updated 2 years ago
- Merging paired-end reads and removing adapters☆46Updated last month
- A list of awesome awesomeness related to bioinformatics and associated fields☆42Updated 8 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆52Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆92Updated 4 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- What should perfect bioinformatic tools be like?☆142Updated last month
- PHAST☆77Updated last week
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- ☆33Updated last month
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 10 months ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Updated 4 months ago
- Python programs for processing GFF3 files☆102Updated last year
- long read RNA-seq quantification☆95Updated last month
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 9 months ago
- gutSMASH☆55Updated 2 months ago