Alternatives and similar repositories for imagej-macros

Users that are interested in imagej-macros are comparing it to the libraries listed below

• kwolbachia / Visualization_toolset
  Imagej toolset to ease hyperstacks visualization and handling
  ☆23Updated last year
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆51Updated 2 years ago
• haesleinhuepf / imagejmacromarkdown
  Generate markdown notebooks from ImageJ Macro
  ☆26Updated 4 years ago
• quantixed / TrackMateR
  Analysis of TrackMate XML outputs in R
  ☆16Updated this week
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆25Updated last month
• DrHanLim / EzColocalization
  ☆12Updated 4 years ago
• BiAPoL / imagej-macro-cheat-sheet
  ☆20Updated 4 years ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆47Updated 3 months ago
• cleterrier / Utils
  ☆10Updated last year
• elgw / deconwolf
  Deconvolution of widefield microscopy images and generation of point spread functions
  ☆55Updated 2 weeks ago
• MontpellierRessourcesImagerie / imagej_macros_and_scripts
  ImageJ macros and scripts written at the imaging facility MRI
  ☆37Updated 3 weeks ago
• maurosilber / binlets
  Denoising via adaptive binning.
  ☆12Updated last year
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆13Updated last year
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• OakesLab / AFT-Alignment_by_Fourier_Transform
  ☆16Updated last year
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆39Updated last week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated last week
• UU-cellbiology / DoM_Utrecht
  Detection of Molecules plugin for ImageJ, Utrecht University
  ☆15Updated 3 years ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆70Updated 2 years ago
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆50Updated 10 months ago
• wbif-bristol / ImageJ-Fiji-Level-2-course
  Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…
  ☆12Updated 3 years ago
• BioImaging-NKI / Cellpose-Fiji
  ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.
  ☆17Updated 9 months ago
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆48Updated 10 months ago
• grishkam / QuickFigures
  QuickFigures is a toolset for creating scientific figures see publication for details
  ☆35Updated last year
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆98Updated 2 years ago
• haesleinhuepf / devbio-napari
  ☆51Updated 7 months ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆135Updated 5 years ago
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆63Updated 2 years ago
• BIOP / coLoc
  A Board Game to teach co-localization analysis
  ☆13Updated last year
• BIOP / abba_python
  ABBA, controlled from python
  ☆16Updated 2 weeks ago