Alternatives and similar repositories for Sequence-manipulation:

Users that are interested in Sequence-manipulation are comparing it to the libraries listed below

• veg / hyphy-analyses
  HyPhy standalone analyses
  ☆42Updated 2 weeks ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆66Updated 7 years ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year
• cboursnell / crb-blast
  Conditional Reciprocal Best Blast
  ☆42Updated 8 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 7 months ago
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆41Updated 2 years ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• evolgeniusteam / EvolviewDocumentation
  Documentation for Evolview
  ☆26Updated 3 years ago
• rhysf / Synima
  Synteny Imager
  ☆61Updated 7 months ago
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆27Updated last month
• evolbioinfo / booster
  ☆28Updated 4 years ago
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆36Updated 7 years ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆57Updated 4 years ago
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆30Updated 11 months ago
• Yale-EEB723 / syllabus
  ☆22Updated 6 years ago
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆25Updated 4 months ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆76Updated this week
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• AliTVTeam / AliTV
  Visualize whole genome alignments as linear maps
  ☆72Updated 7 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆72Updated 3 years ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• LANL-Bioinformatics / PhaME
  Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…
  ☆33Updated last year
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆38Updated last year
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated last year
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆40Updated 3 months ago
• mscampbell / Genome_annotation
  These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…
  ☆15Updated 7 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated last month
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆57Updated 7 months ago