ninehundred1 / CalciumSignalExtract
Extract regions of interest based on correlated pixel intensity
☆24Updated 7 years ago
Alternatives and similar repositories for CalciumSignalExtract:
Users that are interested in CalciumSignalExtract are comparing it to the libraries listed below
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- Fiber photometry analysis☆22Updated 3 months ago
- motion correction☆17Updated 2 years ago
- Fiber Photometry Modular Analysis Tool Suite☆37Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆86Updated 4 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 10 months ago
- Histology processing☆65Updated 3 weeks ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆48Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 5 months ago
- Registration of cells across sessions.☆74Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆92Updated 8 months ago
- ☆35Updated 3 years ago
- ☆11Updated 8 years ago
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 9 months ago
- Tools to work with Allen Inst CCF data in matlab☆130Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 6 months ago
- A deep learning framework for synaptic event detection☆13Updated this week
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆21Updated last week
- pyqt5 dependent applications for IBL sessions☆26Updated 3 weeks ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- Blazing fast calcium imaging analysis toolbox☆22Updated 7 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 3 months ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆32Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆137Updated this week
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 2 months ago