ninehundred1 / CalciumSignalExtractLinks
Extract regions of interest based on correlated pixel intensity
☆24Updated 8 years ago
Alternatives and similar repositories for CalciumSignalExtract
Users that are interested in CalciumSignalExtract are comparing it to the libraries listed below
Sorting:
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆94Updated 10 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- ☆40Updated 3 years ago
- Histology processing☆69Updated this week
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- ☆52Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- Tools to work with Allen Inst CCF data in matlab☆140Updated 2 months ago
- Registration of cells across sessions.☆75Updated last year
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- Tools for processing 2P recordings☆127Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆62Updated last year
- Calcium imaging inter-session alignment☆11Updated last month
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆38Updated last month
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- motion correction☆17Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 3 weeks ago
- Fiber Photometry Modular Analysis Tool Suite☆40Updated 4 years ago
- Pre-processing pipeline for widefield data☆11Updated 4 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 11 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆77Updated 9 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆76Updated 5 months ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆152Updated 3 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Complete Matlab pipeline for large scale calcium imaging data analysis☆258Updated 2 years ago