ninehundred1 / CalciumSignalExtract
Extract regions of interest based on correlated pixel intensity
☆24Updated 8 years ago
Alternatives and similar repositories for CalciumSignalExtract
Users that are interested in CalciumSignalExtract are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆87Updated 6 months ago
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆29Updated 5 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- motion correction☆17Updated 2 years ago
- For displaying spherically corrected visual stimulus on a flat screen.☆9Updated 4 months ago
- ☆36Updated 3 years ago
- Fiber photometry analysis☆22Updated last month
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 10 months ago
- Histology processing☆64Updated 3 weeks ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 9 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Registration of cells across sessions.☆75Updated 8 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆39Updated 3 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 7 months ago
- Tools to work with Allen Inst CCF data in matlab☆134Updated last year
- pyqt5 dependent applications for IBL sessions☆26Updated last month
- ☆11Updated 8 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 5 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated last month
- Pre-processing pipeline for widefield data☆11Updated 4 years ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆34Updated last month
- Analysis package for miniscope data☆13Updated 2 years ago