ninehundred1 / CalciumSignalExtractLinks
Extract regions of interest based on correlated pixel intensity
☆24Updated 8 years ago
Alternatives and similar repositories for CalciumSignalExtract
Users that are interested in CalciumSignalExtract are comparing it to the libraries listed below
Sorting:
- A GUI and library for doing multi-fiber photometry☆18Updated 8 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆98Updated 11 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Registration of cells across sessions.☆75Updated last year
- Tools to work with Allen Inst CCF data in matlab☆142Updated 3 months ago
- Tools for processing 2P recordings☆128Updated 2 years ago
- Histology processing☆71Updated last month
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆62Updated last year
- ☆40Updated 4 years ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Calcium Data Extraction and Analysis☆46Updated 2 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆152Updated 3 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- ☆52Updated last year
- motion correction☆17Updated 2 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆258Updated 2 years ago
- Single photon tools for Neuroscience☆36Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 10 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated last month
- Serial-section automated anatomy extension for ScanImage☆17Updated 2 months ago
- Pre-processing pipeline for widefield data☆12Updated 4 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆152Updated last week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆77Updated 6 months ago
- Image processing and tools for widefield imaging☆19Updated 5 years ago
- Fiber Photometry Modular Analysis Tool Suite☆40Updated 4 years ago
- Calcium imaging inter-session alignment☆13Updated last week