ninehundred1 / CalciumSignalExtractLinks
Extract regions of interest based on correlated pixel intensity
☆24Updated 8 years ago
Alternatives and similar repositories for CalciumSignalExtract
Users that are interested in CalciumSignalExtract are comparing it to the libraries listed below
Sorting:
- A GUI and library for doing multi-fiber photometry☆18Updated 8 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 4 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- ☆41Updated 4 years ago
- Tools for processing 2P recordings☆130Updated 2 years ago
- Histology processing☆71Updated 2 months ago
- Registration of cells across sessions.☆75Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆63Updated last year
- ☆52Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- motion correction☆17Updated 2 years ago
- Calcium imaging inter-session alignment☆14Updated last month
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Serial-section automated anatomy extension for ScanImage☆17Updated last month
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆157Updated 2 weeks ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated 11 months ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆153Updated 3 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆148Updated last year
- Complete Matlab pipeline for large scale calcium imaging data analysis☆259Updated 2 years ago
- Pre-processing pipeline for widefield data☆12Updated 4 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 7 months ago