ninehundred1 / CalciumSignalExtract
Extract regions of interest based on correlated pixel intensity
☆24Updated 7 years ago
Alternatives and similar repositories for CalciumSignalExtract:
Users that are interested in CalciumSignalExtract are comparing it to the libraries listed below
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆47Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆24Updated 5 years ago
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago
- Histology processing☆65Updated 11 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆86Updated 3 months ago
- ☆35Updated 3 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 8 months ago
- Fiber photometry analysis☆22Updated 2 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated 9 months ago
- motion correction☆16Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 4 months ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 7 months ago
- pyqt5 dependent applications for IBL sessions☆25Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 5 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆71Updated 2 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated 11 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆52Updated last week
- Registration of cells across sessions.☆72Updated 6 months ago
- Utilities for managing Neuropixel datasets and Kilosort results☆46Updated last year
- ☆52Updated 6 months ago
- Neuroscience/electrophsyiology data analysis tools (mostly Matlab)☆14Updated 5 years ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆33Updated this week
- Tools to work with Allen Inst CCF data in matlab☆128Updated 11 months ago
- Calcium Data Extraction and Analysis☆43Updated 2 years ago