ninehundred1 / CalciumSignalExtractLinks
Extract regions of interest based on correlated pixel intensity
☆24Updated 8 years ago
Alternatives and similar repositories for CalciumSignalExtract
Users that are interested in CalciumSignalExtract are comparing it to the libraries listed below
Sorting:
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- A GUI and library for doing multi-fiber photometry☆18Updated 8 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆53Updated 2 years ago
- Calcium Data Extraction and Analysis☆47Updated 2 years ago
- Registration of cells across sessions.☆75Updated last year
- ☆52Updated last year
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆62Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Tools to work with Allen Inst CCF data in matlab☆142Updated 4 months ago
- ☆41Updated 4 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Histology processing☆71Updated 2 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- motion correction☆17Updated 2 years ago
- Tools for processing 2P recordings☆130Updated 2 years ago
- Calcium imaging inter-session alignment☆13Updated 3 weeks ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 2 months ago
- Serial-section automated anatomy extension for ScanImage☆17Updated last week
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 11 months ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆258Updated 2 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆78Updated 7 months ago
- Free, platform independent, behavior tracking software.☆142Updated 4 months ago
- Pre-processing pipeline for widefield data☆12Updated 4 years ago