niitsuma / delayedsparse
Efficient sparse matrix implementation for various "Principal Component Analysis"
☆11Updated 6 years ago
Alternatives and similar repositories for delayedsparse:
Users that are interested in delayedsparse are comparing it to the libraries listed below
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆13Updated last week
- ☆18Updated 7 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 3 years ago
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆58Updated 4 years ago
- Fit generalized linear models in python.☆27Updated last year
- ☆33Updated 3 years ago
- Python Wrapper for FIt-SNE☆45Updated 3 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆15Updated last year
- Documentations and Tutorials of Gosling.js☆12Updated 3 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated this week
- Accompanying repository for GkmExplain paper☆22Updated 4 years ago
- Code for the paper on t-SNE with variable degree of freedom☆24Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Comparison of single cell normalization strategies☆10Updated 3 years ago
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆21Updated 4 months ago
- HiDeF (Hierarchical community Decoding Framework)☆13Updated last year
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- Explaining dimensionality results using SHAP values☆53Updated last month
- A Python package for jointly analyzing multimodal single-cell sequencing data☆20Updated last month
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 3 months ago
- Single-cell multi-omics integration using Optimal Transport☆41Updated 5 months ago
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆45Updated last year
- Build contrasts for models defined with formulaic☆11Updated last week
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 7 months ago
- Full annotation using shape-constrained trees☆25Updated last year
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago