QuKunLab / WEDGE
Imputation of single cell sequencing data
☆9Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for WEDGE
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆21Updated 3 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆8Updated 3 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆16Updated 3 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Updated last month
- Scripts for data and figure generation in SAVER paper☆17Updated 3 years ago
- ☆21Updated 4 months ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆11Updated 2 years ago
- ☆10Updated 2 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆24Updated 5 years ago
- ☆19Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- ☆11Updated 4 years ago
- ☆10Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆28Updated 4 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- A python package for calculating local cell specific networks☆16Updated 11 months ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆11Updated last week
- ☆10Updated last year
- Low-dimensional Projection of Single Cell Velocity☆28Updated 2 years ago
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated last month
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 9 months ago
- ☆12Updated 4 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆29Updated 8 months ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Updated 3 months ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago