martinkrz / posepi1
Points of Significance: Modeling infectious epidemics
☆11Updated 6 months ago
Alternatives and similar repositories for posepi1
Users that are interested in posepi1 are comparing it to the libraries listed below
Sorting:
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Some code for monkeypox☆10Updated 2 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 months ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated last week
- R package for Bayesian nonparametric adaptive smoothing with Stan☆9Updated 4 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Inference framework for serological data☆18Updated this week
- ☆19Updated 4 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆21Updated this week
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Pathogen evolution, selection and immunity☆45Updated last year
- Code to test Rt estimates against synthetic data☆17Updated 4 years ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- EcoEpi shinyApps☆18Updated 5 years ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated 2 weeks ago
- Covid-19 epidemiology - data and analysis☆11Updated last year
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆18Updated 3 years ago
- ☆19Updated last month
- Infectious disease model library and utilities☆14Updated 2 years ago
- Interactive plotting for mathematical models of infectious disease spread☆14Updated 11 months ago
- Workshop on hhh4 and the endemic-epidemic framework☆17Updated 2 years ago
- Tools for evolutionary forecasting☆13Updated last month
- ☆26Updated 4 years ago
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated 4 months ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated this week