Alternatives and similar repositories for posepi1

Users that are interested in posepi1 are comparing it to the libraries listed below

• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆22Updated this week
• andy-iskauskas / hmer
  An R package for Bayes Linear emulation and history matching.
  ☆16Updated 3 months ago
• kpzoo / EpiFilter
  Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…
  ☆22Updated last year
• SamuelBrand1 / MonkeypoxUK
  Some code for monkeypox
  ☆10Updated 2 years ago
• thibautjombart / OutbreakTools
  Basic Tools for the Analysis of Disease Outbreaks
  ☆12Updated 5 years ago
• mrc-ide / reactidd
  This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…
  ☆17Updated last year
• epiforecasts / inc2prev
  Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
  ☆17Updated last year
• ChrisHIV / teaching
  ☆19Updated 2 months ago
• SABS-R3-Epidemiology / epiabm
  Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.
  ☆18Updated this week
• akira-endo / COVID19_backwardtracing
  Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing
  ☆8Updated 4 years ago
• goldingn / neuts2efficacy
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission
  ☆17Updated last year
• objornstad / oshinys
  EcoEpi shinyApps
  ☆18Updated 5 years ago
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆18Updated 4 years ago
• adamkucharski / 2020-cov-tracing
  Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…
  ☆13Updated 2 years ago
• CADDE-CENTRE / Novel-SARS-CoV-2-P1-Lineage-in-Brazil
  ☆19Updated 4 years ago
• jrfaulkner / spmrf
  R package for Bayesian nonparametric adaptive smoothing with Stan
  ☆9Updated 4 years ago
• seabbs / idmodelr
  Infectious disease model library and utilities
  ☆14Updated 2 years ago
• charlesm93 / disease_transmission_workflow
  Supplementary code for paper "Bayesian workflow for disease transmission model".
  ☆27Updated 4 years ago
• gasparrini / ItalyCOVIDdeath
  Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic
  ☆16Updated 4 months ago
• alex1770 / Covid-19
  Covid-19 epidemiology - data and analysis
  ☆11Updated last year
• ekenah / TranStat
  An R package for the analysis of infectious disease transmission data
  ☆10Updated 3 years ago
• epinowcast / epinowcast
  Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…
  ☆61Updated 3 weeks ago
• kidusasfaw / spatPomp
  R package for statistical inference of spatiotemporal partially observed Markov processes
  ☆11Updated 6 months ago
• SineadMorris / shinySIR
  Interactive plotting for mathematical models of infectious disease spread
  ☆14Updated last year
• trvrb / sismid
  Pathogen evolution, selection and immunity
  ☆45Updated last year
• lsbastos / Delay
  Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.
  ☆15Updated 5 years ago
• mhoehle / STA427_SM4IDE
  Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
  ☆18Updated 3 years ago
• rafalab / excessmort
  R package for estimating excess deaths from daily count data
  ☆20Updated 2 months ago
• mobs-lab / mixing-patterns
  Inferring high-resolution human mixing patterns for disease modeling
  ☆46Updated 2 years ago
• covid19br / nowcaster
  Repository to the R package nowcaster, nowcasting with INLA
  ☆21Updated last week