martinkrz / posepi1
Points of Significance: Modeling infectious epidemics
☆11Updated 5 months ago
Alternatives and similar repositories for posepi1:
Users that are interested in posepi1 are comparing it to the libraries listed below
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆18Updated this week
- An R package for Bayes Linear emulation and history matching.☆16Updated 3 weeks ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- Some code for monkeypox☆10Updated 2 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆18Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- EcoEpi shinyApps☆18Updated 5 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆16Updated 10 months ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- ☆33Updated last week
- Inference framework for serological data☆18Updated last week
- R package for Bayesian nonparametric adaptive smoothing with Stan☆9Updated 4 years ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated 3 weeks ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Everything you've never dreamed about measuring on ecological networks.☆69Updated last year
- Code to test Rt estimates against synthetic data☆17Updated 4 years ago
- ☆19Updated 3 years ago
- R package for estimating excess deaths from daily count data☆20Updated 2 weeks ago
- ☆17Updated 4 years ago
- Infectious disease model library and utilities☆15Updated 2 years ago
- diversitree: comparative phylogenetic analyses of diversification☆33Updated 5 months ago
- ☆19Updated 2 months ago
- Pathogen evolution, selection and immunity☆46Updated last year
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Four-in-one value pack of host-virus association data☆24Updated 2 years ago
- Conditional Auto-Regressive LASSO in R☆20Updated 2 years ago
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated 3 months ago
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated 3 months ago
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆10Updated last year