martinkrz / posepi1
Points of Significance: Modeling infectious epidemics
☆11Updated 3 months ago
Alternatives and similar repositories for posepi1:
Users that are interested in posepi1 are comparing it to the libraries listed below
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆16Updated 9 months ago
- EcoEpi shinyApps☆18Updated 5 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆18Updated this week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- ☆19Updated 3 years ago
- Covid-19 epidemiology - data and analysis☆11Updated last year
- Some code for monkeypox☆10Updated 2 years ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 weeks ago
- Pathogen evolution, selection and immunity☆46Updated 11 months ago
- ☆19Updated last month
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆18Updated last year
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆17Updated 2 months ago
- R package for Bayesian nonparametric adaptive smoothing with Stan☆9Updated 4 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- diversitree: comparative phylogenetic analyses of diversification☆33Updated 4 months ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated 2 weeks ago
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- Inference framework for serological data☆16Updated this week
- ☆26Updated 3 years ago
- R package to reconstruct ancestral networks inferred with RevBayes☆11Updated 3 weeks ago
- Four-in-one value pack of host-virus association data☆23Updated 2 years ago
- Infectious disease model library and utilities☆15Updated 2 years ago
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated 2 months ago
- Bayesian estimation of Rt (C code)☆13Updated 4 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- R package for deriving social mixing matrices from survey data.☆38Updated 2 months ago
- In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence…☆15Updated 2 years ago