Interpret perturbation responses from scRNA-seq perturbation experiments
☆16Mar 4, 2025Updated last year
Alternatives and similar repositories for CellCap
Users that are interested in CellCap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆22Oct 29, 2024Updated last year
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆66Jan 12, 2026Updated 6 months ago
- a guideRNA database generation tool☆21Mar 3, 2025Updated last year
- scDFM: Distributional Flow Matching for Robust Single-Cell Perturbation Prediction (ICLR 2026)☆44Apr 22, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Aug 19, 2025Updated 11 months ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 9 months ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 7 months ago
- ☆30Oct 14, 2024Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆182Feb 25, 2025Updated last year
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆150Aug 14, 2024Updated last year
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆17Mar 3, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics☆15Jul 16, 2026Updated 3 weeks ago
- rnn trained on r/emojipasta☆12Nov 1, 2018Updated 7 years ago
- This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to …☆16Sep 7, 2025Updated 11 months ago
- Single-cell Analysis of Perturbational Effects using Machine Learning☆19Oct 9, 2025Updated 10 months ago
- ☆90Jul 18, 2025Updated last year
- Using combined evidence from replicates to evaluate ChIP-seq peaks☆21Mar 14, 2026Updated 4 months ago
- Efficient data structures and IO for whole slide image analysis☆33Jul 28, 2026Updated last week
- ☆21Jun 5, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Sep 8, 2020Updated 5 years ago
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 4 months ago
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆39Updated this week
- Human Primary T cells: A Practical Guide☆15Sep 18, 2018Updated 7 years ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 6 years ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Sep 17, 2021Updated 4 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 4 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- This is a Flask Crud Operation based on REST Principle☆14Sep 15, 2018Updated 7 years ago
- Fast inference for Generalised Linear Mixed Models.☆14Jan 17, 2025Updated last year
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Jun 30, 2021Updated 5 years ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- ☆98Jul 21, 2025Updated last year
- Comprehensive suite for evaluating perturbation prediction models☆148Jul 27, 2026Updated last week
- ☆10Nov 29, 2022Updated 3 years ago