neurodata / ndviz
NeuroDataViz: Web visualization and analysis for neuroimaging datasets. Powered by Neuroglancer.
☆9Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for ndviz
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆44Updated last week
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆40Updated 4 months ago
- Read and write Neuroglancer datasets programmatically.☆134Updated this week
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated last year
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆24Updated this week
- Distributed segmentation for bio-image-analysis☆36Updated 4 months ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆66Updated 2 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆37Updated last year
- Tool for graph-based image segmentation and analysis☆21Updated 7 years ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆21Updated 5 years ago
- ☆36Updated 3 months ago
- Render transformed image tiles☆34Updated this week
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated last year
- Aligner for large scale serial section image data☆14Updated last year
- Automatic segmentation of electron microscopy volumes☆31Updated 12 years ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated last week
- ☆10Updated last week
- BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome☆10Updated 2 years ago
- 3-D imaging visualisation through slicing☆28Updated last year
- Dendritic Spine Analysis Software☆13Updated last year
- Documentations of BigNeuron Project progress☆24Updated 8 years ago
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆14Updated 8 years ago
- Block-wise task scheduling for large nD volumes.☆27Updated 3 weeks ago
- NeuroData's MRI to Graphs (m2g) - connectome estimation package and pipeline☆64Updated 7 months ago
- Tools for distributed alignment of massive images☆75Updated last week
- 🌈☆52Updated last year
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆60Updated 5 years ago
- www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200☆41Updated this week
- ☆29Updated 7 months ago