berenslab / MorphoPyLinks
A Python package for feature extraction of neural morphologies
☆46Updated 3 months ago
Alternatives and similar repositories for MorphoPy
Users that are interested in MorphoPy are comparing it to the libraries listed below
Sorting:
- Deconvolution of calcium imaging data☆105Updated last year
- IaC codebase for the NeuroCAAS Platform☆39Updated 2 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- motion correction☆17Updated 3 years ago
- ☆13Updated 3 months ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 months ago
- ☆20Updated 7 years ago
- Segmentation of anatomical structures in a common coordinate space☆35Updated this week
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- Shareable, interactive scientific figures in the cloud☆37Updated 5 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files☆27Updated 5 months ago
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆39Updated last year
- Python package providing mesoscale connectivity models for mouse.☆39Updated last year
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆35Updated 2 months ago
- 3-D imaging visualisation through slicing☆31Updated last year
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago
- IBL core shared libraries☆66Updated this week
- Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.☆51Updated 2 weeks ago
- Utilities for formatting matplotlib figures☆31Updated 11 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 5 years ago
- ☆34Updated 8 months ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆15Updated last week
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated this week
- Repository for collecting materials from nwb hackathons☆24Updated 3 months ago
- Browser-based NWB visualization and DANDI exploration☆62Updated this week
- A curated list of awesome Janelia software☆17Updated 11 months ago
- Block-wise task scheduling for large nD volumes.☆33Updated 10 months ago