saalfeldlab / render
Render transformed image tiles
☆34Updated this week
Alternatives and similar repositories for render:
Users that are interested in render are comparing it to the libraries listed below
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- Create movies from series of key-frames in napari.☆37Updated 3 years ago
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆19Updated 2 weeks ago
- python tools for BigDataViewer☆22Updated 3 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆47Updated 3 weeks ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated last week
- Running compute-intense parts of BigStitcher distributed☆26Updated last week
- Create 3D/4D animations using a natural language-based syntax☆59Updated 2 years ago
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated this week
- ImgLib2/BDV implementation of Stitching for large datasets☆73Updated 2 weeks ago
- ImgLib2-based viewer for registered SPIM stacks and more☆40Updated 3 weeks ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆27Updated 6 years ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆28Updated 2 weeks ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last month
- ☆17Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 8 months ago
- 3D/4D volumetric rendering of microscopy data☆22Updated 2 months ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated last week
- Fiji plugins for starting BigDataViewer and exporting data.☆21Updated 6 months ago
- Fusing image tiles with dask array's map_blocks☆30Updated last year
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18Updated 4 years ago
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Updated 10 months ago
- ☆12Updated 4 years ago
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆25Updated last week
- Distributed segmentation for bio-image-analysis☆37Updated 2 weeks ago
- ☆41Updated this week
- ImageJ convenience layer for N5☆16Updated 2 weeks ago
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆15Updated last year
- Image acquisition software for mesoSPIM light-sheet microscopes.☆41Updated 2 weeks ago