saalfeldlab / render

Related projects: ⓘ

• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆34Updated 11 months ago
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆21Updated last year
• bigdataviewer / bigdataviewer-vistools
  Helpers to use BigDataViewer as a quick visualization tool in other projects.
  ☆25Updated 3 months ago
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆22Updated last week
• clEsperanto / i2k2020_tutorial_clij_clesperanto
  ☆12Updated 3 years ago
• scalableminds / webknossos-libs
  Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
  ☆22Updated this week
• bigdataviewer / bigdataviewer-core
  ImgLib2-based viewer for registered SPIM stacks and more
  ☆33Updated this week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆43Updated this week
• ClearVolume / clearvolume
  ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …
  ☆44Updated last year
• saalfeldlab / n5-viewer
  BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.
  ☆17Updated 3 months ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 11 months ago
• haesleinhuepf / napari-script-editor
  A python script editor plugin for napari
  ☆11Updated last year
• imjoy-team / imjoy-rpc
  The RPC library used in ImJoy.
  ☆23Updated last month
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆66Updated 3 weeks ago
• jhuapl-boss / intern
  Python SDK for interacting with the BossDB REST API
  ☆21Updated 3 months ago
• VolkerH / DaskFusion
  Fusing image tiles with dask array's map_blocks
  ☆29Updated 6 months ago
• imglib / imglyb
  Connecting Java/ImgLib2 + Python/NumPy
  ☆31Updated last month
• allen-cell-animated / agave
  ☆34Updated this week
• WU-BIMAC / NBOMicroscopyMetadataSpecs
  The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …
  ☆14Updated last year
• bigdataviewer / bigdataviewer_fiji
  Fiji plugins for starting BigDataViewer and exporting data.
  ☆21Updated 3 weeks ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆37Updated 3 years ago
• guiwitz / napari_demo
  ☆21Updated 3 years ago
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆57Updated last year
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆35Updated 2 months ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆32Updated last month
• InsightSoftwareConsortium / GetYourBrainTogether
  Get Your Brain Together Neuroimage Registration Workshops and Hackathons
  ☆20Updated last month
• constantinpape / heimdall
  Python based viewer for large mulit-dimensional datasets.
  ☆20Updated 4 years ago
• PolusAI / nyxus
  A fully scalable robust image feature extraction library.
  ☆19Updated last week
• juglab / napari-n2v
  A self-supervised denoising algorithm.
  ☆24Updated 5 months ago
• micro-manager / pymmcore
  Python bindings for MMCore, Micro-Manager's device control layer
  ☆33Updated 2 months ago