A python package for the topological analysis of neurons.
☆29Feb 26, 2025Updated last year
Alternatives and similar repositories for TMD
Users that are interested in TMD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Topological Neuron Synthesis☆44Feb 26, 2025Updated last year
- Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight i…☆36Jan 3, 2025Updated last year
- Discrete Morse-based pipeline for neuron tracing on tracer injection and single-neuron data sets.☆14Jan 14, 2021Updated 5 years ago
- SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.☆24Jan 8, 2023Updated 3 years ago
- Mesh containment and line segment intersection queries in Python (over rust)☆12Nov 19, 2025Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ImageJ plugin for neurite tracing and analysis☆14Mar 19, 2020Updated 6 years ago
- Matlab pipeline for simulating dynamical networks and evaluating dynamic community tracking methods, including CPM, MMM and DPPM☆13Nov 19, 2020Updated 5 years ago
- ☆12Mar 25, 2022Updated 4 years ago
- Neuronal Morphology Analysis Tool☆109Feb 26, 2025Updated last year
- ☆12Dec 27, 2014Updated 11 years ago
- T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It w…☆10Sep 3, 2019Updated 6 years ago
- Codes for the ICLR 2022 paper: Trigger Hunting with a Topological Prior for Trojan Detection☆11Sep 19, 2023Updated 2 years ago
- Biologically detailed neural network simulations and analysis API☆14Feb 26, 2025Updated last year
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆11Feb 9, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Reproducing Random Numbers in Matlab and Python / NumPy☆11Dec 6, 2015Updated 10 years ago
- Tools for working with single-neuron morphological reconstructions☆22Apr 16, 2026Updated 3 months ago
- Easy to use ETA calculation and progress bar library.☆14Jun 2, 2015Updated 11 years ago
- The Blue Brain Pythonic Simulation and Network Analysis Productivity layer☆21Feb 26, 2025Updated last year
- NEURON Simulator☆533Updated this week
- ☆11Sep 27, 2018Updated 7 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 5 years ago
- ☆18Dec 8, 2022Updated 3 years ago
- GTree is a brain-wide tool for neuron tracing.☆17Jan 13, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- JSDoc to ReST documentation, ready to be processed by Sphinx Doc☆13Jun 28, 2016Updated 10 years ago
- Python library to interface with CATMAID servers. Fully interoperable with navis.☆24Updated this week
- Pytorch implementation of LFADS for demo at CAN workshop☆19Oct 7, 2019Updated 6 years ago
- Version of Cvapp as used on NeuroMorpho.org. Based on Robert Cannon's initial implementation.☆16Jul 1, 2024Updated 2 years ago
- ☆32Jul 31, 2025Updated last year
- Python library to read PicoQuant PTU files (raw TTTR data) as well as build FLIM image☆10Jul 19, 2024Updated 2 years ago
- Pytorch version for DAC (ICCV2017)☆12Nov 29, 2019Updated 6 years ago
- Read Becker & Hickl SDT files.☆14Jul 29, 2026Updated last week
- This is a ray tracer I wrote for a univeristy assignment last year. I don't claim that it is fast or good code.☆13Sep 27, 2018Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆13Feb 27, 2024Updated 2 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆36Updated this week
- Leonardo Citraro, Mateusz Kozinski, Pascal Fua, Towards Reliable Evaluation of Road Network Reconstructions, ECCV 2020☆11Aug 21, 2020Updated 5 years ago
- A simple SWC-file importer for Blender. This addon for Blender allows you to import files from e.g. neuromorpho.org.☆13Nov 5, 2023Updated 2 years ago
- Blue Brain multi-modal registration and alignment toolbox☆12Feb 14, 2024Updated 2 years ago
- Collaboration between BBP and AIBS☆66Nov 24, 2025Updated 8 months ago
- Python package to plot phase portraits of 2D differential equations.☆27Sep 13, 2015Updated 10 years ago