Alternatives and similar repositories for TMD

Users that are interested in TMD are comparing it to the libraries listed below

• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆49Updated last week
• berenslab / MorphoPy
  ☆42Updated last month
• BlueBrain / NeuroM
  Neuronal Morphology Analysis Tool
  ☆106Updated 4 months ago
• AllenInstitute / sonata
  Collaboration between BBP and AIBS
  ☆58Updated last year
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆30Updated this week
• CAVEconnectome / nglui
  ☆12Updated last week
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆134Updated last week
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆24Updated last week
• NeurodataWithoutBorders / nwb_hackathons
  Repository for collecting materials from nwb hackathons
  ☆24Updated 2 months ago
• BlueBrain / MorphIO
  A python and C++ library for reading and writing neuronal morphologies
  ☆28Updated 4 months ago
• orena1 / neuron_reduce
  ☆26Updated 4 years ago
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 4 years ago
• cuntzlab / treestoolbox
  TREES toolbox
  ☆28Updated 2 months ago
• NeurodataWithoutBorders / nwbwidgets
  Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.
  ☆50Updated 4 months ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆154Updated this week
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 3 weeks ago
• int-brain-lab / atlas
  Brain flatmaps generation
  ☆11Updated 2 years ago
• BlueBrain / NeuroMorphoVis
  A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of ne…
  ☆138Updated 2 weeks ago
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆37Updated last year
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆59Updated 2 weeks ago
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• anne-urai / largescale_recordings
  Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…
  ☆18Updated 3 years ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆38Updated last month
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆38Updated last year
• navis-org / navis
  Python library for analysis of neuroanatomical data.
  ☆102Updated last month
• BigNeuron / Code_and_Analysis_Tools
  ☆12Updated 3 years ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆50Updated last week
• MetaCell / nwb-explorer
  NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files
  ☆25Updated last month
• FZJ-INM1-BDA / siibra-python
  Software interfaces for interacting with brain atlases - Python client
  ☆54Updated this week
• NeurodataWithoutBorders / nwb-schema
  Data format specification schema for the NWB neurophysiology data format
  ☆58Updated this week