A python package for the topological analysis of neurons.
☆29Feb 26, 2025Updated last year
Alternatives and similar repositories for TMD
Users that are interested in TMD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python and C++ library for reading and writing neuronal morphologies☆28Feb 26, 2025Updated last year
- Runs cells from stand-alone packages.☆16Oct 2, 2024Updated 2 years ago
- Public tutorials around electrophysiological simulations☆27Nov 7, 2022Updated 3 years ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆14Sep 7, 2021Updated 5 years ago
- Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight i…☆36Jan 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Discrete Morse-based pipeline for neuron tracing on tracer injection and single-neuron data sets.☆14Jan 14, 2021Updated 5 years ago
- SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.☆24Jan 8, 2023Updated 3 years ago
- Mesh containment and line segment intersection queries in Python (over rust)☆12Updated this week
- A curated list of resources for 3D segmentation of neurites in EM images☆59Mar 11, 2024Updated 2 years ago
- This is now in the docs folder of the main NEURON repository. Make all changes there.☆12Aug 14, 2020Updated 6 years ago
- ☆12Mar 25, 2022Updated 4 years ago
- Neuronal Morphology Analysis Tool☆109Feb 26, 2025Updated last year
- T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It w…☆10Sep 3, 2019Updated 7 years ago
- The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from vis…☆67Nov 14, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Codes for the ICLR 2022 paper: Trigger Hunting with a Topological Prior for Trojan Detection☆11Sep 19, 2023Updated 3 years ago
- ☆16Nov 2, 2016Updated 9 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆11Feb 9, 2021Updated 5 years ago
- Reproducing Random Numbers in Matlab and Python / NumPy☆11Dec 6, 2015Updated 10 years ago
- Tools for working with single-neuron morphological reconstructions☆22Apr 16, 2026Updated 5 months ago
- The Blue Brain Pythonic Simulation and Network Analysis Productivity layer☆21Feb 26, 2025Updated last year
- NEURON Simulator☆549Updated this week
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Jul 22, 2024Updated 2 years ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of ne…☆138Oct 29, 2025Updated 11 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- NEAT (NEural Analysis Toolkit)☆23May 20, 2026Updated 4 months ago
- ☆18Dec 8, 2022Updated 3 years ago
- GTree is a brain-wide tool for neuron tracing.☆17Jan 13, 2021Updated 5 years ago
- Pytorch implementation of LFADS for demo at CAN workshop☆19Oct 7, 2019Updated 7 years ago
- ☆51Nov 9, 2024Updated last year
- Version of Cvapp as used on NeuroMorpho.org. Based on Robert Cannon's initial implementation.☆16Jul 1, 2024Updated 2 years ago
- JSDoc to ReST documentation, ready to be processed by Sphinx Doc☆14Jun 28, 2016Updated 10 years ago
- ☆32Jul 31, 2025Updated last year
- Python library to read PicoQuant PTU files (raw TTTR data) as well as build FLIM image☆10Jul 19, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pytorch version for DAC (ICCV2017)☆12Nov 29, 2019Updated 6 years ago
- Pose Estimation Errors, the Ultimate Diagnosis☆10Apr 22, 2021Updated 5 years ago
- Explore from keyword search to dense retrieval and reranking, which injects the intelligence of LLMs into your search system, making it f…☆14Aug 27, 2023Updated 3 years ago
- This is a ray tracer I wrote for a univeristy assignment last year. I don't claim that it is fast or good code.☆13Sep 27, 2018Updated 8 years ago
- ☆13Feb 27, 2024Updated 2 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆37Sep 14, 2026Updated 3 weeks ago
- Leonardo Citraro, Mateusz Kozinski, Pascal Fua, Towards Reliable Evaluation of Road Network Reconstructions, ECCV 2020☆11Aug 21, 2020Updated 6 years ago